Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM67_RS02930 Genome accession   NZ_LS483383
Coordinates   565036..565749 (-) Length   237 a.a.
NCBI ID   WP_005590790.1    Uniprot ID   A0AAV3EDB0
Organism   Streptococcus cristatus ATCC 51100 strain NCTC 12479     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 560036..570749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM67_RS02915 (NCTC12479_00556) - 560092..561216 (+) 1125 WP_005592432.1 AI-2E family transporter -
  DQM67_RS02920 (NCTC12479_00557) - 561604..563250 (+) 1647 WP_005590793.1 phosphoenolpyruvate carboxykinase (ATP) -
  DQM67_RS02925 (NCTC12479_00558) - 563341..564681 (+) 1341 WP_005590792.1 hemolysin family protein -
  DQM67_RS02930 (NCTC12479_00559) treR 565036..565749 (-) 714 WP_005590790.1 trehalose operon repressor Regulator
  DQM67_RS02935 (NCTC12479_00560) treP 565936..567903 (+) 1968 WP_005590789.1 PTS system trehalose-specific EIIBC component -
  DQM67_RS02940 (NCTC12479_00561) treC 567966..569597 (+) 1632 WP_005590788.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27777.74 Da        Isoelectric Point: 8.3084

>NTDB_id=1139495 DQM67_RS02930 WP_005590790.1 565036..565749(-) (treR) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
MKKYKQLFKQLERDILGEKYQFGDFLPSEHQLMEIYQVSRDTVRKALALLQEEGLIEKVRGQGSKVVKQEQLDFPVSNLT
SYQELVAQHQLQSKTNVISLDKITVDKKLSKTTGFPEYRLVWRIVRQRVVDNIASVLDIDYLDKSLVPDLTREIGEHSIY
SYLEETLKLNIAYARKEITIDHVSSQDHILLDIGRDQHVVSIKSQVYLADGRQFQYTESRHKLDKFRFVDFATRQKE

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1139495 DQM67_RS02930 WP_005590790.1 565036..565749(-) (treR) [Streptococcus cristatus ATCC 51100 strain NCTC 12479]
ATGAAGAAATACAAACAATTATTCAAACAACTTGAAAGAGATATTTTAGGTGAAAAATACCAGTTCGGTGACTTTCTTCC
TAGTGAACATCAGCTGATGGAAATCTACCAAGTCAGTCGGGATACGGTTCGTAAGGCTTTAGCGCTCTTGCAAGAAGAGG
GACTGATTGAGAAAGTGCGGGGGCAGGGCTCCAAAGTCGTCAAACAGGAACAACTAGATTTCCCTGTTTCTAACTTAACC
AGCTATCAAGAATTAGTGGCACAGCACCAGCTTCAGTCCAAGACCAATGTCATCAGCCTTGATAAAATCACTGTAGATAA
AAAGCTCTCAAAAACAACCGGCTTTCCAGAGTACCGCTTGGTTTGGCGCATTGTCCGACAGCGAGTGGTCGACAACATTG
CTTCTGTCTTGGATATTGACTATCTAGATAAAAGCTTGGTGCCAGATCTGACCAGAGAAATCGGGGAACATTCTATCTAT
TCCTACTTGGAAGAAACCTTAAAGCTTAACATTGCCTATGCCAGAAAAGAAATTACCATCGATCATGTTAGTAGCCAAGA
CCATATCCTTCTGGACATCGGCCGAGACCAACATGTCGTTTCCATTAAATCTCAGGTCTATCTAGCTGACGGTCGCCAAT
TTCAATACACAGAGAGTCGACACAAATTAGATAAATTTCGCTTTGTGGACTTTGCTACTCGGCAGAAAGAATGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

62.447

100

0.624

Multiple sequence alignment