Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM89_RS08990 Genome accession   NZ_LS483382
Coordinates   1751264..1751977 (+) Length   237 a.a.
NCBI ID   WP_076634440.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13738     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1746264..1756977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM89_RS08980 (NCTC13738_01780) treC 1747334..1748962 (-) 1629 WP_076634438.1 alpha,alpha-phosphotrehalase -
  DQM89_RS08985 (NCTC13738_01781) treP 1749029..1751053 (-) 2025 WP_076634439.1 PTS system trehalose-specific EIIBC component -
  DQM89_RS08990 (NCTC13738_01782) treR 1751264..1751977 (+) 714 WP_076634440.1 trehalose operon repressor Regulator
  DQM89_RS09000 (NCTC13738_01783) - 1752256..1752593 (-) 338 Protein_1670 winged helix-turn-helix transcriptional regulator -
  DQM89_RS09005 (NCTC13738_01784) - 1752780..1753637 (+) 858 WP_023610754.1 VOC family protein -
  DQM89_RS09010 (NCTC13738_01785) yaaA 1753679..1754410 (+) 732 WP_023610692.1 peroxide stress protein YaaA -
  DQM89_RS09015 (NCTC13738_01786) nrdG 1754584..1755198 (-) 615 WP_021775544.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQM89_RS09020 (NCTC13738_01787) - 1755213..1755707 (-) 495 WP_014407930.1 GNAT family N-acetyltransferase -
  DQM89_RS09025 (NCTC13738_01788) - 1755716..1756651 (-) 936 WP_076634441.1 Gfo/Idh/MocA family protein -
  DQM89_RS09605 (NCTC13738_01789) - 1756680..1756826 (-) 147 WP_023610752.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27591.79 Da        Isoelectric Point: 9.7427

>NTDB_id=1139473 DQM89_RS08990 WP_076634440.1 1751264..1751977(+) (treR) [Streptococcus pyogenes strain NCTC13738]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLNIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1139473 DQM89_RS08990 WP_076634440.1 1751264..1751977(+) (treR) [Streptococcus pyogenes strain NCTC13738]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTCTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCGCTTCTCACTAAGGCAG
GCCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAGCATCATCAGATCATGTTCCCCATCTCAGAACTAACT
AGCTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAAACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675

Multiple sequence alignment