Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM69_RS09855 Genome accession   NZ_LS483381
Coordinates   2027614..2028324 (+) Length   236 a.a.
NCBI ID   WP_019769294.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NCTC10921     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2022614..2033324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM69_RS09845 (NCTC10921_01966) treC 2023572..2025197 (-) 1626 WP_109982783.1 alpha,alpha-phosphotrehalase -
  DQM69_RS09850 (NCTC10921_01967) treP 2025398..2027365 (-) 1968 WP_019781573.1 PTS system trehalose-specific EIIBC component -
  DQM69_RS09855 (NCTC10921_01968) treR 2027614..2028324 (+) 711 WP_019769294.1 trehalose operon repressor Regulator
  DQM69_RS09860 (NCTC10921_01969) - 2028646..2028852 (+) 207 WP_019769293.1 hypothetical protein -
  DQM69_RS09865 (NCTC10921_01970) - 2028845..2029414 (+) 570 WP_002961124.1 hypothetical protein -
  DQM69_RS09870 (NCTC10921_01971) - 2029417..2029626 (+) 210 WP_002961122.1 helix-turn-helix transcriptional regulator -
  DQM69_RS09875 (NCTC10921_01972) - 2029629..2029817 (+) 189 WP_002961120.1 hypothetical protein -
  DQM69_RS09885 (NCTC10921_01973) - 2030065..2032701 (-) 2637 WP_019769292.1 ABC transporter permease -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27393.32 Da        Isoelectric Point: 9.9542

>NTDB_id=1139421 DQM69_RS09855 WP_019769294.1 2027614..2028324(+) (treR) [Streptococcus sobrinus strain NCTC10921]
MKKYQVVFRDLEKKINQSDYPADSFLPSEGELAGQYGVSRDTIRKALSLLEKAKLIRKSQGRASLVRRQQHFNFPVSNLT
SYQELVQNLQMNSKTKVLSLYRLLVDGDLARVTGFQPGQQVWRIQRQRIVDGASSVLDTDYLLTDFVKRINQTIAQKSIY
NYLEGELGLEIAYAQKEITIEPTSEQDKIWLDVGLERHVVSVKSKVYLADQAQFQFTESRHILEKFHFIDYARRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1139421 DQM69_RS09855 WP_019769294.1 2027614..2028324(+) (treR) [Streptococcus sobrinus strain NCTC10921]
ATGAAAAAATATCAGGTCGTTTTTAGAGACTTAGAGAAAAAAATTAATCAGAGCGATTATCCTGCCGATTCCTTCCTTCC
CAGCGAAGGGGAGCTGGCTGGGCAGTATGGGGTCAGTCGTGATACCATCCGCAAAGCCCTTAGCCTATTAGAAAAGGCCA
AGCTCATCCGTAAGAGTCAAGGCAGAGCCAGCTTAGTTAGACGGCAACAACACTTTAACTTCCCCGTCTCCAACCTGACC
AGCTATCAGGAATTAGTCCAAAACCTACAAATGAACTCCAAAACCAAGGTCCTCTCCCTCTATCGTCTCCTAGTTGATGG
GGACTTAGCTAGGGTGACAGGTTTCCAGCCTGGTCAACAGGTCTGGCGAATCCAACGTCAGCGAATTGTTGATGGAGCAT
CCTCCGTCCTAGACACCGACTATCTCCTGACTGACTTTGTCAAAAGAATTAACCAAACTATCGCCCAAAAGTCCATCTAC
AACTACTTGGAAGGAGAGTTAGGGCTGGAGATTGCCTATGCCCAAAAAGAAATTACCATTGAGCCGACTAGCGAGCAAGA
CAAAATCTGGCTGGATGTTGGCCTTGAACGTCATGTCGTTTCAGTTAAATCCAAGGTCTACTTAGCCGACCAAGCCCAGT
TTCAGTTCACTGAAAGCCGGCACATTCTCGAGAAATTTCACTTCATTGATTACGCTAGACGAAAAAAATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

55.508

100

0.555

Multiple sequence alignment