Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQM69_RS09605 Genome accession   NZ_LS483381
Coordinates   1974635..1975999 (-) Length   454 a.a.
NCBI ID   WP_029236682.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NCTC10921     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1969635..1980999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM69_RS09585 - 1970380..1971136 (-) 757 Protein_1821 lysostaphin resistance A-like protein -
  DQM69_RS09590 (NCTC10921_01913) - 1971397..1972257 (-) 861 WP_004205757.1 DegV family protein -
  DQM69_RS09595 (NCTC10921_01914) - 1972471..1972983 (-) 513 WP_019789278.1 NYN domain-containing protein -
  DQM69_RS09600 (NCTC10921_01915) rlmB 1973901..1974638 (-) 738 WP_019771549.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DQM69_RS09605 (NCTC10921_01916) radA 1974635..1975999 (-) 1365 WP_029236682.1 DNA repair protein RadA Machinery gene
  DQM69_RS09610 (NCTC10921_01917) - 1976083..1976547 (-) 465 WP_019776493.1 cysteine hydrolase family protein -
  DQM69_RS09615 (NCTC10921_01918) - 1976556..1977002 (-) 447 WP_109982775.1 dUTP diphosphatase -
  DQM69_RS09620 (NCTC10921_01919) - 1977321..1978349 (+) 1029 WP_109982776.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DQM69_RS09625 (NCTC10921_01920) galU 1978388..1979290 (+) 903 WP_019769015.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DQM69_RS09630 (NCTC10921_01921) - 1979580..1980008 (+) 429 WP_002961690.1 hypothetical protein -
  DQM69_RS09635 (NCTC10921_01922) - 1980115..1980717 (-) 603 WP_002961692.1 AAA family ATPase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49651.00 Da        Isoelectric Point: 6.6527

>NTDB_id=1139418 DQM69_RS09605 WP_029236682.1 1974635..1975999(-) (radA) [Streptococcus sobrinus strain NCTC10921]
MAKKKSTFVCQECGYNSPKYLGRCPNCGSWSSFVEEKEVEEVKNARVSLTGEKTKPTKLKDVSSIDYARTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYIYAETNMQNIRTEIE
RLQPDFLIIDSIQTVMSPEITSVQGSVSQVREVTAELMQLAKSNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQTGGLVEVLNPSQLFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEAPTNAQDAFIGEIGLTGEIR
RVNRIEQRLNEATKLGFTKVYAPKNALHGIVIPKNIQVIGVSTVGEVLKKVFKS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1139418 DQM69_RS09605 WP_029236682.1 1974635..1975999(-) (radA) [Streptococcus sobrinus strain NCTC10921]
ATCGCTAAGAAAAAATCAACCTTTGTCTGTCAGGAATGTGGCTACAATTCGCCCAAGTATCTGGGCCGTTGTCCCAACTG
TGGTTCCTGGTCCTCCTTTGTCGAAGAAAAGGAAGTCGAAGAGGTCAAGAATGCCAGGGTTTCCTTGACCGGCGAAAAGA
CCAAGCCAACCAAGTTGAAAGATGTTTCCTCCATTGATTATGCTAGGACCAAGACGGATATGGATGAGTTCAACCGTGTC
TTGGGGGGTGGTGTAGTGCCAGGCAGTCTGGTTCTCATCGGTGGCGACCCCGGTATTGGGAAATCAACCTTACTCTTGCA
AGTCTCGACCCAGCTGGCTAATAAGGGAACGGTTCTCTATGTTTCAGGGGAAGAATCCGCCGAGCAAATCAAGCTCCGCA
GCGAGAGACTGGGCGATATTGATAATGAATTTTACATCTACGCCGAGACCAATATGCAAAATATCCGCACGGAAATTGAG
CGGCTGCAACCAGATTTTCTGATTATTGACTCCATCCAGACAGTCATGAGTCCCGAGATTACTAGTGTACAGGGCTCGGT
CTCCCAGGTGCGGGAGGTAACGGCTGAGCTCATGCAGCTGGCCAAGAGTAATAATATTGCTACCTTCATTGTTGGCCATG
TGACCAAGGAAGGAACTCTGGCTGGTCCTAGAATGCTGGAGCACATGGTGGATACGGTCCTTTATTTTGAAGGCGAACGC
CACCACACCTTTCGGATTTTGCGAGCAGTCAAAAATCGTTTCGGTTCAACCAACGAAATCGGTATTTTTGAGATGCAGAC
GGGCGGTCTGGTTGAGGTCCTCAATCCCAGCCAGCTCTTTTTAGAGGAACGTCTGGACGGGGCAACGGGTTCGGCTATTG
TTGTCACCATGGAAGGAACCCGGCCCATCTTAGCCGAGGTGCAAGCCTTAGTCACACCGACTGTTTTTGGTAATGCCAAG
CGAACCACGACAGGATTGGATTTCAATCGGGTTAGCCTGATTATGGCCGTATTGGAGAAACGCTGTGGACTCCTTCTGCA
AAATCAGGATGCCTACCTCAAGTCGGCTGGTGGGGTCAAATTGGACGAGCCTGCCATCGACCTAGCTGTGGCAGTCGCCA
TCGCTTCCTCCTACAAGGAAGCACCGACCAATGCCCAAGATGCTTTCATCGGGGAAATCGGTCTGACTGGTGAAATTCGT
CGGGTCAACCGTATTGAGCAACGCCTCAATGAAGCTACCAAACTGGGCTTTACCAAGGTTTACGCTCCTAAAAATGCCTT
GCATGGCATTGTAATTCCTAAAAACATCCAAGTCATTGGCGTTTCAACCGTCGGGGAAGTATTAAAGAAAGTATTTAAGT
CATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

88.053

99.559

0.877
  radA Streptococcus pneumoniae D39

87.832

99.559

0.874
  radA Streptococcus pneumoniae R6

87.832

99.559

0.874
  radA Streptococcus pneumoniae Rx1

87.832

99.559

0.874
  radA Streptococcus pneumoniae TIGR4

87.832

99.559

0.874
  radA Streptococcus mitis SK321

87.611

99.559

0.872
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.78

0.626

Multiple sequence alignment