Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQM69_RS03055 Genome accession   NZ_LS483381
Coordinates   587267..589072 (+) Length   601 a.a.
NCBI ID   WP_002959464.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NCTC10921     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 582267..594072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM69_RS03035 (NCTC10921_00593) - 583209..584516 (-) 1308 WP_109982476.1 lanthionine synthetase LanC family protein -
  DQM69_RS03040 (NCTC10921_00594) - 584526..585176 (-) 651 Protein_551 amino acid ABC transporter permease -
  DQM69_RS03045 - 585195..586006 (-) 812 Protein_552 transporter substrate-binding domain-containing protein -
  DQM69_RS03050 (NCTC10921_00597) coiA 586274..587254 (+) 981 WP_109982477.1 competence protein CoiA Machinery gene
  DQM69_RS03055 (NCTC10921_00598) pepF 587267..589072 (+) 1806 WP_002959464.1 oligoendopeptidase F Regulator
  DQM69_RS03060 (NCTC10921_00599) typA 589272..591119 (+) 1848 WP_109982478.1 translational GTPase TypA -
  DQM69_RS03065 (NCTC10921_00600) - 591449..591751 (+) 303 WP_002959460.1 DUF3165 family protein -
  DQM69_RS03070 (NCTC10921_00601) murD 592069..593424 (+) 1356 WP_109982479.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68607.52 Da        Isoelectric Point: 4.5290

>NTDB_id=1139390 DQM69_RS03055 WP_002959464.1 587267..589072(+) (pepF) [Streptococcus sobrinus strain NCTC10921]
MTDNRALIDEKYKWDLSSIFASDQDWEAQYQGLADAIEQAQDLSGHLAQSAQDLLRVTQTYLNLARCLEKVFVYASMKND
QDTTVATYQELAAKATSLSAKYSQAFAFFEPEVLALGEGKFAEFLQEESELGLYRHFFGQIFSQQAHVLNQEKEELLAQA
QEVLEAGAETYEILDNADISFPSVLDEEGQEVDLSHGNFITLMESKDRRVRQAAYEAYYSTYQQFQHTYAKTLATTVKQH
NFSAKVRHYDSARQAAMEANHIPEGVYDILLSTVHKYLPLLRGYMSLRQEILGLDDLKMYDVYTPLSKLDMTYTYEDAKG
KALEVLSVFGLDYQARVEEALSQGWIDVAANKGKRSGAYSGGSYDTKAFILLNWQDTLDNLYTLVHEMGHSMHSTFTREN
QPYVYGDYSIFLAEIASTTNENIMTETLLKEAKDDKERFALLNYYLDSFKGTVFRQTQFAEFEQAIHEADAKGQVLTSQY
LNELYADLNQAYYGLPKEDNPQIQYEWARIPHFYYNFYVYQYATGFAAASYLAEKIVHGNQADKARYLDYLKAGSSAYPL
EVIAKAGVDMTQADYLEGAFQVFAKRLEELESLVKQGVHRE

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1139390 DQM69_RS03055 WP_002959464.1 587267..589072(+) (pepF) [Streptococcus sobrinus strain NCTC10921]
ATGACAGATAACCGTGCACTTATTGATGAGAAGTACAAGTGGGATTTGAGCAGTATTTTTGCCAGCGACCAGGACTGGGA
GGCCCAATATCAGGGTCTAGCAGATGCTATCGAGCAGGCCCAAGACCTGTCAGGCCACTTGGCCCAGTCAGCCCAAGACT
TATTAAGAGTTACCCAGACTTATTTAAACCTGGCTCGTTGCCTGGAGAAGGTCTTTGTTTATGCTTCCATGAAAAATGAT
CAGGACACGACAGTAGCCACTTATCAGGAGTTGGCAGCTAAGGCGACAAGTCTGTCAGCTAAGTACAGTCAGGCCTTTGC
CTTTTTTGAGCCAGAAGTATTGGCCTTGGGAGAAGGAAAGTTTGCTGAATTTTTGCAGGAGGAATCAGAATTAGGTCTCT
ACCGGCATTTCTTTGGGCAAATCTTCTCCCAACAGGCCCATGTCCTAAATCAAGAAAAAGAAGAGCTCTTAGCTCAGGCT
CAGGAGGTTCTTGAGGCGGGGGCGGAAACCTATGAGATTCTGGACAATGCGGACATCAGTTTTCCAAGCGTCCTTGATGA
GGAAGGTCAAGAAGTTGACTTGAGCCATGGTAATTTTATCACCCTGATGGAATCCAAGGACAGGCGGGTTCGGCAGGCTG
CCTATGAAGCCTATTACAGTACCTACCAGCAGTTTCAGCATACCTATGCTAAGACCCTGGCCACGACTGTCAAGCAGCAT
AATTTTTCGGCCAAGGTTCGCCACTATGACTCTGCTCGTCAGGCAGCTATGGAGGCCAATCATATCCCAGAAGGGGTCTA
TGACATCCTCCTAAGTACGGTCCACAAGTATTTGCCTCTCTTGCGAGGCTACATGAGCTTGCGGCAGGAAATTTTGGGCT
TGGATGATTTGAAAATGTATGATGTCTACACGCCCCTGTCAAAACTGGATATGACCTACACTTACGAGGATGCCAAAGGC
AAGGCTCTAGAAGTCTTGTCGGTCTTTGGCCTTGATTACCAGGCACGAGTAGAAGAGGCCCTGTCCCAGGGCTGGATTGA
TGTTGCAGCCAATAAGGGCAAACGCTCGGGAGCATATTCGGGTGGCTCCTATGATACCAAGGCTTTTATCCTGCTCAACT
GGCAGGATACCCTGGACAATCTCTACACCCTGGTCCATGAGATGGGCCACAGTATGCATTCGACCTTTACCCGAGAAAAT
CAGCCCTATGTCTACGGAGATTATTCTATCTTCTTGGCTGAGATTGCTTCGACGACCAATGAAAATATCATGACCGAGAC
CCTGCTTAAGGAAGCCAAGGACGACAAGGAACGCTTTGCCCTGCTCAATTATTATCTGGACAGTTTCAAGGGGACGGTTT
TTCGTCAGACACAGTTTGCGGAATTTGAGCAAGCTATTCATGAAGCTGATGCTAAGGGTCAGGTCTTGACCAGTCAGTAC
CTCAATGAGCTTTATGCTGACCTCAACCAGGCCTACTATGGTCTGCCCAAGGAAGACAATCCTCAAATTCAGTACGAGTG
GGCTCGGATTCCCCATTTTTACTATAATTTTTATGTCTATCAATATGCGACGGGATTTGCAGCAGCCAGTTATCTGGCTG
AGAAAATTGTCCATGGTAATCAGGCCGACAAGGCCCGCTATTTGGATTATCTCAAAGCAGGTAGTTCGGCCTATCCGCTG
GAAGTCATCGCCAAGGCTGGGGTTGATATGACTCAAGCCGACTACTTAGAGGGGGCCTTTCAAGTCTTTGCCAAACGCCT
GGAAGAATTGGAAAGCCTAGTTAAACAGGGAGTGCATAGGGAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

65.275

99.667

0.651

Multiple sequence alignment