Detailed information NTG1139387

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: DQM69_RS02445
• Genome accession: NZ_LS483381
• Coordinates: 465374..467476 (+)
• Length: 700 a.a.
• NCBI ID: WP_002960430.1
• Uniprot ID: -
• Organism: Streptococcus sobrinus strain NCTC10921
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 460374..472476

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM69_RS02415 (NCTC10921_00469)	-	460927..461172 (+)	246	WP_019777408.1	hypothetical protein	-
DQM69_RS02420 (NCTC10921_00470)	-	461237..462616 (+)	1380	WP_094966497.1	hypothetical protein	-
DQM69_RS02425 (NCTC10921_00471)	-	462800..463414 (+)	615	WP_019777900.1	MerR family transcriptional regulator	-
DQM69_RS02430 (NCTC10921_00472)	-	463520..463873 (+)	354	Protein_430	IS3 family transposase	-
DQM69_RS02435 (NCTC10921_00473)	-	463957..464892 (-)	936	WP_111687989.1	IS30 family transposase	-
DQM69_RS02445 (NCTC10921_00474)	clpC	465374..467476 (+)	2103	WP_002960430.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
DQM69_RS02450 (NCTC10921_00475)	-	467910..468755 (+)	846	WP_002960429.1	SDR family oxidoreductase	-
DQM69_RS02455 (NCTC10921_00476)	dhaM	468988..469362 (-)	375	WP_019781567.1	dihydroxyacetone kinase phosphoryl donor subunit DhaM	-
DQM69_RS02460 (NCTC10921_00477)	dhaL	469363..469941 (-)	579	WP_019795624.1	dihydroxyacetone kinase subunit DhaL	-
DQM69_RS02465 (NCTC10921_00478)	dhaK	469980..470969 (-)	990	WP_019768867.1	dihydroxyacetone kinase subunit DhaK	-
DQM69_RS02470 (NCTC10921_00479)	-	471398..472117 (+)	720	WP_019768868.1	YebC/PmpR family DNA-binding transcriptional regulator	-

Sequence

Protein

• Length: 700 a.a.
• Molecular weight: 76612.38 Da
• Isoelectric Point: 4.8082

>NTDB_id=1139387 DQM69_RS02445 WP_002960430.1 465374..467476(+) (clpC) [Streptococcus sobrinus strain NCTC10921]
MNNNFGFNNMDDIFNQLMGNMGGFNSETRRYRINGREVTPEEFNYYRQTGHLPNQEAIQDGASQANQGQIKQGGILANLG
RNLTEEARQGKLDPVIGRNQEIQDTAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVAGDVPAAIKNKEIISIDISGL
EAGTQYRGAFEENIQKLMDEVKQAGNIILFFDEIHQILGAGSTGDGQGSKGLADIIKPALSRGELTVIGATTQDEYRNTI
LKNAALARRFNEVKVNAPSAEDTFAILQGIKPLYEQHHNVELPDSVLKAAVDYSIQYMPQRALPDKAIDLVDVTAAHLAA
QHPATDVKTLEAGIAKARDRQQAAADKEDYEAALAEKVKIDDLQKQIDNHTENQKVVATVNDVAQAVERMTGIPVSQMGA
SDIERLKEMGSRLKGKVIGQDEAVQAVSKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGTKDAVIRLD
MSEYSDRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNT
VIIATSNAGYSFGAVPEEDGKEVSLRDKLAPFFRPEFLNRFNGVIEFSHLSKEDLQEIVDLMLDEVNRTLAKKGLTLEVS
DAAKAYLIEEGYDEAMGARPLRRVIEGQIRDKVTDFYLDHLDVKALKADMVDGKLVISQA

Nucleotide

• Length: 2103 bp

>NTDB_id=1139387 DQM69_RS02445 WP_002960430.1 465374..467476(+) (clpC) [Streptococcus sobrinus strain NCTC10921]
ATGAACAACAATTTTGGATTTAACAATATGGACGATATTTTCAATCAACTGATGGGTAACATGGGCGGTTTCAATTCAGA
AACTCGTCGCTACCGCATCAATGGTCGAGAAGTCACTCCGGAAGAATTTAACTACTATCGCCAAACTGGTCACCTGCCTA
ATCAAGAAGCAATCCAAGACGGGGCTTCCCAAGCAAACCAAGGGCAAATCAAGCAAGGTGGTATCCTGGCTAATCTGGGG
CGTAACCTGACAGAAGAAGCTCGCCAAGGCAAGCTGGATCCTGTTATCGGTCGGAACCAAGAAATTCAAGATACAGCAGA
AATCTTGGCTCGTCGGACCAAGAATAATCCTGTCCTAGTCGGTGATGCTGGTGTTGGTAAGACAGCGGTTGTTGAAGGCT
TGGCCCAAGCTATTGTCGCAGGTGATGTGCCTGCTGCTATCAAGAACAAGGAAATTATCAGCATTGATATTTCAGGTCTG
GAAGCTGGTACCCAATATCGTGGGGCATTTGAAGAAAACATTCAAAAGCTGATGGATGAAGTCAAACAAGCAGGTAATAT
CATTCTCTTCTTTGATGAAATTCACCAAATCTTGGGTGCTGGTAGTACTGGTGATGGTCAAGGCTCTAAGGGTTTGGCCG
ACATTATCAAGCCTGCCCTCTCTCGTGGTGAGCTAACCGTGATTGGGGCAACGACCCAAGATGAATACCGTAACACCATT
TTGAAGAATGCAGCTCTGGCTCGTCGTTTCAATGAAGTTAAGGTCAATGCTCCTTCGGCAGAAGATACCTTCGCTATCCT
GCAAGGGATTAAGCCCCTCTATGAACAACACCACAATGTGGAATTGCCAGATAGTGTTTTGAAGGCTGCGGTGGATTATT
CTATCCAATATATGCCCCAAAGGGCCCTGCCTGACAAGGCTATTGACTTGGTCGATGTGACGGCGGCCCACTTGGCAGCT
CAACATCCAGCAACCGATGTTAAGACCTTGGAAGCTGGTATTGCTAAAGCACGTGACCGCCAACAAGCTGCAGCTGATAA
GGAAGATTACGAAGCAGCTCTGGCTGAAAAAGTAAAGATTGATGACTTGCAAAAACAAATTGACAACCATACCGAAAATC
AAAAGGTTGTGGCGACAGTCAATGATGTGGCTCAAGCGGTTGAACGGATGACTGGTATTCCTGTTTCACAAATGGGGGCC
AGCGACATTGAACGCTTGAAAGAAATGGGTAGTCGCCTGAAAGGCAAGGTTATCGGTCAAGATGAGGCAGTTCAAGCCGT
CAGCAAGGCTATTCGTCGGAACCGAGCTGGTTTTGATGAAGGTAATCGCCCAATCGGTAGCTTCCTCTTCGTCGGACCTA
CTGGGGTTGGTAAGACCGAATTGGCTAAGCAATTGGCCCTGGATATGTTTGGTACCAAGGATGCCGTTATTCGCTTGGAT
ATGTCTGAATATAGCGACCGGACGGCTGTTTCTAAATTGATTGGTACGACTGCTGGTTATGTGGGTTACGATGACAATTC
CAACACTTTGACCGAACGGGTTCGTCGCAATCCTTATTCTATTATCCTCCTTGATGAAATCGAAAAGGCTGACCCACAAG
TCATCACCTTGCTTTTGCAAGTTTTGGACGATGGTCGCCTGACCGATGGTCAAGGCAACACCGTCAACTTCAAGAATACT
GTGATTATCGCCACCTCTAATGCTGGCTATAGCTTTGGTGCTGTGCCAGAAGAAGATGGTAAGGAAGTTAGTCTGCGAGA
TAAATTAGCACCATTCTTCCGTCCAGAATTCCTTAACCGCTTCAACGGGGTTATCGAGTTCTCTCATTTATCTAAAGAAG
ATTTGCAGGAAATTGTTGACTTGATGCTGGATGAAGTCAACCGCACCTTGGCCAAGAAGGGTTTGACCTTGGAAGTCAGC
GATGCGGCTAAGGCTTACCTGATTGAAGAAGGTTACGATGAAGCCATGGGAGCACGGCCTCTGCGTCGGGTCATCGAAGG
CCAAATTCGTGACAAGGTCACCGACTTCTATCTGGATCATCTGGATGTCAAAGCTCTCAAGGCCGATATGGTTGACGGTA
AGTTAGTCATTTCTCAAGCCTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (610-680)

• ATPase family associated with various cellular activities (AAA) (AAA) (118-250)

• AAA domain (Cdc48 subfamily) (AAA_2) (443-602)

• AAA lid domain (AAA_lid_9) (259-352)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	49.222	100	0.497
clpE	Streptococcus mutans UA159	51.944	91.857	0.477
clpE	Streptococcus pneumoniae Rx1	46.733	100	0.47
clpE	Streptococcus pneumoniae D39	46.733	100	0.47
clpE	Streptococcus pneumoniae R6	46.733	100	0.47
clpE	Streptococcus pneumoniae TIGR4	49.843	90.857	0.453
clpC	Bacillus subtilis subsp. subtilis str. 168	45.866	91.571	0.42
clpC	Streptococcus pneumoniae Rx1	42.969	91.429	0.393
clpC	Streptococcus pneumoniae D39	42.969	91.429	0.393
clpC	Streptococcus thermophilus LMD-9	43.103	91.143	0.393
clpC	Streptococcus pneumoniae TIGR4	43.014	91	0.391
clpC	Streptococcus thermophilus LMG 18311	42.79	91.143	0.39
clpC	Streptococcus mutans UA159	43.178	89	0.384
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.842	88.429	0.37