Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQM75_RS08555 Genome accession   NZ_LS483380
Coordinates   1782410..1783336 (-) Length   308 a.a.
NCBI ID   WP_043031408.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11824     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777410..1788336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM75_RS08545 (NCTC11824_01718) amiF 1780415..1781338 (-) 924 WP_111692758.1 ATP-binding cassette domain-containing protein Regulator
  DQM75_RS08550 (NCTC11824_01719) amiE 1781331..1782401 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  DQM75_RS08555 (NCTC11824_01720) amiD 1782410..1783336 (-) 927 WP_043031408.1 oligopeptide ABC transporter permease OppC Regulator
  DQM75_RS08560 (NCTC11824_01721) amiC 1783336..1784835 (-) 1500 WP_111692759.1 ABC transporter permease Regulator
  DQM75_RS08565 (NCTC11824_01722) amiA3 1784899..1786875 (-) 1977 WP_111692760.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34518.39 Da        Isoelectric Point: 7.1547

>NTDB_id=1139357 DQM75_RS08555 WP_043031408.1 1782410..1783336(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTVVMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVIVGGIWGVSKAVDKVMIEVYNIISNLPQMLVIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1139357 DQM75_RS08555 WP_043031408.1 1782410..1783336(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTAGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTCTTTAGGCAATTCTTCTCGCGTAAATCAACCGTTGTGATGCTGGTTATTTTAATCGCTATTA
TTTTGATGAGCTTCATCTATCCTATGTTTGCCAACTATGACTTTGGTGATGTGAGCAATATTAATGATTTTTCAAAGCGT
TATATCGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATCTTAATTTCAGTTATTGCTACCATCATCAATATGATTATCGGAGTCATTGTCGGTGGTATTTGGGGTG
TTTCCAAAGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCGTTATCATTGTG
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCTTTTTGTGTGACAGGCTGGATTGGAATTGCTTATTC
GATTCGTGTACAAATTTTGCGTTATCGTGATTTAGAATACAATTTAGCAAGTCAGACCTTAGGAACACCCACCCATAAAA
TTGTCATTAAAAATCTTTTGCCTCAATTGGTTTCAGTGATCGTTTCAATGGTTTCCTTGCTATTGCCGTCTTATATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGCTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAACAATTTAACAACAAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCCTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.974

100

0.76
  amiD Streptococcus thermophilus LMG 18311

75.649

100

0.756
  amiD Streptococcus thermophilus LMD-9

75.649

100

0.756

Multiple sequence alignment