Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQM75_RS03240 Genome accession   NZ_LS483380
Coordinates   664127..665929 (+) Length   600 a.a.
NCBI ID   WP_111692310.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11824     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 659127..670929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM75_RS03220 (NCTC11824_00644) queA 660180..661208 (-) 1029 WP_111692307.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  DQM75_RS03225 (NCTC11824_00645) - 661476..662180 (+) 705 WP_043030611.1 glucosamine-6-phosphate deaminase -
  DQM75_RS03230 (NCTC11824_00646) - 662352..663068 (+) 717 WP_111692308.1 pseudouridine synthase -
  DQM75_RS03235 (NCTC11824_00647) - 663160..664137 (+) 978 WP_111692309.1 competence protein CoiA -
  DQM75_RS03240 (NCTC11824_00648) pepF 664127..665929 (+) 1803 WP_111692310.1 oligoendopeptidase F Regulator
  DQM75_RS03245 (NCTC11824_00649) - 666129..666686 (+) 558 WP_012678253.1 GNAT family N-acetyltransferase -
  DQM75_RS03250 (NCTC11824_00650) - 666676..667311 (+) 636 WP_111692311.1 HAD-IA family hydrolase -
  DQM75_RS03255 (NCTC11824_00651) - 667358..667996 (+) 639 WP_172954538.1 HAD family hydrolase -
  DQM75_RS03260 (NCTC11824_00652) - 668079..668786 (+) 708 WP_111692910.1 O-methyltransferase -
  DQM75_RS03265 (NCTC11824_00653) prsA 668849..669850 (+) 1002 WP_111692313.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69119.76 Da        Isoelectric Point: 4.5408

>NTDB_id=1139330 DQM75_RS03240 WP_111692310.1 664127..665929(+) (pepF) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLSAAIEAARQQAGHLLDSSSSLLDITELQLELARRVEKLYVYASMKND
QDTTVAKYQEYQAKASGIYAKFSEAFSFYEPEFMDLTQETYQAFLAETPELTVYDHFFDKLFKTREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIAFPIVTNDKGEEVELTHGNFISLMESKDRKVRRAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYASARQAAMSANFIPEAVYDTLLENVNKHLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGQDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEY
LNNLYADLNEKYYGLKKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQEDIDHYLTYLKSGNSDYPL
EVIAKAGVDMGKGDYLEAAFKVFEERLTELEDLVARGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1139330 DQM75_RS03240 WP_111692310.1 664127..665929(+) (pepF) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
ATGACAGATAATCGTAGTCATCTAGAGGAAAAGTATACTTGGGATTTAAGCACTATTTTTGCAACTGACGCAGCTTGGGA
AACAGAGGCAGATAGCCTGTCAGCAGCTATTGAGGCTGCAAGACAGCAGGCTGGGCATTTGTTGGATTCAAGTAGCAGTC
TCTTAGACATCACAGAGCTACAGTTGGAGCTGGCTCGTCGTGTTGAAAAGCTTTATGTTTATGCCAGCATGAAAAACGAT
CAGGATACAACAGTTGCGAAGTATCAGGAATATCAGGCTAAGGCTTCTGGTATTTATGCTAAATTTAGCGAAGCCTTCTC
TTTTTATGAGCCAGAGTTTATGGACTTGACTCAAGAGACCTATCAGGCCTTCTTAGCTGAGACACCGGAGCTAACAGTCT
ATGACCATTTCTTTGATAAATTGTTCAAGACGCGTGAGCATGTCCTTAGTCAGGCTGAGGAGGAGCTATTAGCAGGGGCA
CAAGAAATCTTTAATGGTGCTGAGGAGACCTTTAGTATCCTAGATAATGCCGACATTGCTTTTCCTATTGTGACAAATGA
TAAGGGAGAAGAGGTTGAGCTAACACATGGTAATTTCATTAGCTTGATGGAATCGAAAGACCGCAAGGTGCGTAGGGCTG
CCTATGAAGCCATGTATAGTACTTATGAGCAATTCCAGCACACCTATGCTAAAACCCTGCAAACCAATGTAAAGGTGCAA
AATTATAAGGCACGTGTTCACAAATATGCTTCAGCCCGTCAGGCAGCGATGTCAGCCAACTTTATCCCAGAGGCTGTTTA
CGATACCCTACTAGAAAACGTTAATAAGCATTTGCCGCTGCTTCATCGTTATTTGAAGCTACGTCAAGAGGTGCTTGGTT
TAGATGATCTAAAGATGTATGATGTTTATACTCCTTTATCTGAGACAGATCTTGCTATCGGCTATGATGAGGCCTTGGAA
AAAGCAGAGAAGGTTTTGGCTGTTTTTGGTCAGGATTATTCAGAGCGTGTGCATCGTGCCTTTACAGAGCGTTGGATTGA
TGTGCATGTCAATAAGGGCAAACGCTCAGGAGCTTACTCTGGTGGTTCCTATGATACCAATGCCTTTATGCTCTTAAATT
GGCAAGACACCCTTGATAACCTCTATACTTTGGTGCATGAGACAGGCCATAGCCTGCATTCAACCTTTACGCGTGAAACA
CAGCCTTACGTGTATGGAGATTACAGCATTTTCCTAGCTGAGATTGCCTCAACGACGAATGAAAACATCATGACTGAGGC
CTTGCTAAATGAGGTAGAGGACGACAAGGAGCGCTTTGCTATTTTGAACCATTACCTAGATGGTTTTCGTGGAACGGTTT
TCCGTCAAACACAGTTTGCTGAGTTTGAGCATGCTATTCATCAGGCGGATCAAAATGGCGAGGTGTTAACAAGTGAATAC
CTCAATAATCTCTATGCTGATTTAAACGAAAAATATTATGGCTTAAAAAAAGAGGACAACCATTTTATCCAGTATGAGTG
GGCTCGCATTCCGCATTTCTATTACAATTATTATGTCTACCAGTATGCAACAGGCTTTGCAGCAGCGAGCTATTTGGCTG
ATAAGATTGTTCATGGCACACAAGAGGATATTGATCATTACTTGACCTACCTCAAGTCTGGAAATTCAGATTACCCACTT
GAAGTGATTGCTAAGGCTGGGGTTGATATGGGTAAGGGTGATTACCTCGAAGCAGCCTTTAAGGTCTTTGAAGAGCGTTT
GACAGAGCTAGAGGACTTAGTGGCAAGAGGGGCTCATCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

72.833

100

0.728

Multiple sequence alignment