Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQM75_RS02275 Genome accession   NZ_LS483380
Coordinates   449957..450682 (+) Length   241 a.a.
NCBI ID   WP_111692231.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11824     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 444957..455682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM75_RS02245 (NCTC11824_00447) tsaE 445512..445955 (+) 444 WP_111692228.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQM75_RS02250 (NCTC11824_00448) - 445948..446475 (+) 528 WP_111692229.1 GNAT family N-acetyltransferase -
  DQM75_RS02255 (NCTC11824_00449) brpA 446476..447738 (+) 1263 WP_043030505.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQM75_RS02260 (NCTC11824_00450) - 447904..448206 (-) 303 WP_111692230.1 chemotaxis protein -
  DQM75_RS02265 (NCTC11824_00451) - 448203..448622 (-) 420 WP_012515079.1 HIT family protein -
  DQM75_RS09975 (NCTC11824_00452) - 449079..449420 (-) 342 WP_337660719.1 hypothetical protein -
  DQM75_RS02275 (NCTC11824_00453) pptA 449957..450682 (+) 726 WP_111692231.1 ABC transporter ATP-binding protein Regulator
  DQM75_RS02280 (NCTC11824_00454) - 450686..451720 (+) 1035 WP_111692232.1 ABC transporter permease -
  DQM75_RS02285 (NCTC11824_00455) ccrZ 451783..452574 (+) 792 WP_012515084.1 cell cycle regulator CcrZ -
  DQM75_RS02290 (NCTC11824_00456) trmB 452574..453209 (+) 636 WP_043038649.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQM75_RS02305 (NCTC11824_00458) rimP 454600..455082 (+) 483 WP_042670147.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26520.83 Da        Isoelectric Point: 4.8615

>NTDB_id=1139325 DQM75_RS02275 WP_111692231.1 449957..450682(+) (pptA) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
MLNIENVTGGYLNIPVLKDISFSVANGELVGLIGLNGAGKSTTINEIIGFLKPYKGRISIDGLTLAEHEADYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAHKRAEPFLELFRLTDKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAIADLIKALEVEKAKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGTLADLQAVFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1139325 DQM75_RS02275 WP_111692231.1 449957..450682(+) (pptA) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
ATGTTAAACATTGAGAATGTCACTGGAGGCTACCTTAATATTCCAGTTTTGAAGGATATTAGCTTTTCTGTTGCAAATGG
AGAGCTGGTAGGGCTTATTGGTCTAAATGGTGCTGGTAAGTCAACAACGATTAATGAAATTATTGGGTTTTTAAAGCCAT
ATAAGGGAAGGATTTCCATTGATGGCTTAACCTTGGCGGAGCATGAAGCTGATTATCGCAAGAAAATTGGCTTTATCCCA
GAAACACCAAGCCTGTATGAGGAGCTGACCTTAGCAGAGCATATCAATACGGTAGCTATGGCCTACGATATTGATGTGGA
GCTGGCACATAAGCGAGCTGAGCCCTTCTTAGAGCTGTTTCGCTTGACGGATAAGTTGGATTGGTTTCCGGTGCATTTTT
CTAAGGGAATGAAGCAAAAGGTTATGATTATTTGCGCTTTTGTCATTGACCCTAGTCTTTTTATTCTTGATGAGCCCTTT
TTGGGGCTTGACCCCTTAGCAATTGCTGATTTGATTAAGGCTTTAGAGGTTGAAAAGGCAAAGGGCAAGTCAATTCTAAT
GAGTACCCATGTGCTGGATTCGGCAGAAAAAATGTGTGACCGTTTTGTGATATTGCATCAGGGACAGGTGCGTGCACAAG
GGACTCTGGCGGATTTGCAGGCAGTCTTTGGAGATGCTTCAGCTAGTCTTAATGACATTTACCTAGCGCTGACAAAAGAG
GGGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.895

99.17

0.743
  pptA Streptococcus thermophilus LMD-9

74.059

99.17

0.734

Multiple sequence alignment