Detailed information NTG1139322

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQM75_RS01595
• Genome accession: NZ_LS483380
• Coordinates: 304320..305255 (+)
• Length: 311 a.a.
• NCBI ID: WP_111692166.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain NCTC11824
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 299320..310255

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM75_RS01575 (NCTC11824_00314)	-	299481..301139 (+)	1659	WP_043030442.1	peptide ABC transporter substrate-binding protein	-
DQM75_RS01580 (NCTC11824_00315)	-	301306..302220 (+)	915	WP_012514937.1	ABC transporter permease	-
DQM75_RS01585 (NCTC11824_00316)	-	302230..303261 (+)	1032	WP_012678545.1	ABC transporter permease	-
DQM75_RS01590 (NCTC11824_00317)	oppD	303274..304320 (+)	1047	WP_012678544.1	ABC transporter ATP-binding protein	Regulator
DQM75_RS01595 (NCTC11824_00318)	amiF	304320..305255 (+)	936	WP_111692166.1	ABC transporter ATP-binding protein	Regulator
DQM75_RS01600 (NCTC11824_00319)	rnjA	305886..307568 (-)	1683	WP_043025155.1	ribonuclease J1	-
DQM75_RS01605 (NCTC11824_00320)	-	307570..307800 (-)	231	WP_012678542.1	DNA-dependent RNA polymerase subunit epsilon	-
DQM75_RS01610 (NCTC11824_00321)	tsaB	308086..308784 (+)	699	WP_043029338.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
DQM75_RS01615 (NCTC11824_00322)	rimI	308787..309212 (+)	426	WP_111692167.1	ribosomal protein S18-alanine N-acetyltransferase	-
DQM75_RS01620 (NCTC11824_00323)	tsaD	309202..310218 (+)	1017	WP_012678539.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35063.19 Da
• Isoelectric Point: 9.0170

>NTDB_id=1139322 DQM75_RS01595 WP_111692166.1 304320..305255(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERRRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEAHQYRAERGL

Nucleotide

• Length: 936 bp

>NTDB_id=1139322 DQM75_RS01595 WP_111692166.1 304320..305255(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAAGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACAA
CAGTTGGTCGAGCTATTTTGAAATTGTATGATATTAGTGATGGCGAGATTATCTTTAATGGAGAAAACGTCTCCCAATTA
AAGGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCGCAAATGATCTTCCAAGATCCTCAGGCTAGTCTGAACGGTCGCAT
GAAAATCAGAGACATTGTTGCAGAGGGATTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AAGAGCTGTTAAAGCTTGTTGGGCTCAATCAGGATCATTTGACGCGGTACCCACATGAATTTTCCGGTGGCCAACGCCAG
CGGATTGGCATTGCGCGTGCCCTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTCGTGAGTCTCATGCAGCAATTGCAAAAGAAGCGCGGCTTGACCTATCTCTTTATCGCACACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGAACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACAAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAG
GCGCATTGCAGAGGTTTATGATCCTAGTCAAGAGCTAGATGGCCAAGAGCGGCAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACGCAGGCCGAAGCCCATCAGTACCGAGCAGAGCGTGGCCTCTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.922	98.392	0.531
amiF	Streptococcus thermophilus LMG 18311	53.595	98.392	0.527
amiF	Streptococcus salivarius strain HSISS4	53.268	98.392	0.524