Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQM75_RS01270 Genome accession   NZ_LS483380
Coordinates   241125..242486 (+) Length   453 a.a.
NCBI ID   WP_111692139.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11824     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 236125..247486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM75_RS01255 (NCTC11824_00253) - 237696..239492 (+) 1797 WP_043030407.1 ABC transporter ATP-binding protein -
  DQM75_RS01260 (NCTC11824_00254) - 239643..240410 (+) 768 WP_043040009.1 epoxyqueuosine reductase QueH -
  DQM75_RS01265 (NCTC11824_00255) - 240612..241058 (+) 447 WP_043983859.1 dUTP diphosphatase -
  DQM75_RS01270 (NCTC11824_00256) radA 241125..242486 (+) 1362 WP_111692139.1 DNA repair protein RadA Machinery gene
  DQM75_RS01280 (NCTC11824_00257) - 243258..243764 (+) 507 WP_111692141.1 beta-class carbonic anhydrase -
  DQM75_RS01285 (NCTC11824_00258) - 243892..244605 (+) 714 WP_042671341.1 TIGR00266 family protein -
  DQM75_RS01290 (NCTC11824_00259) gltX 245207..246652 (+) 1446 WP_111692142.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49360.78 Da        Isoelectric Point: 7.0274

>NTDB_id=1139320 DQM75_RS01270 WP_111692139.1 241125..242486(+) (radA) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEETEVKDVKNARISLTGEKSKPIKLKHVNGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGDIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDLPKGIEVVGVTTVGEVLKAVFT

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1139320 DQM75_RS01270 WP_111692139.1 241125..242486(+) (radA) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
ATAGCTAAGAAAAAGGCGAGGTTTATCTGTGGGGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGCTGCCCTAATTG
CTCTGCTTGGTCTTCCTTTGTAGAGGAGACAGAGGTCAAGGACGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATGTCAATGGCGTTCGCTACCAGCGTATCCAGACTGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGAGGTGTTGTACCGGGGAGCTTGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACGCTGCTCTTGCA
GGTTTCTATCCAGCTTGCGGATAAGGGAACTGTTTTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGATCGTTTGGGACAGACCGACAATGATTTTTACCTCTATGCGGAGACCAATATGCAGGCTATTCGAGCAGAGATTGAA
GCCATTCAGCCGGATTTTTTGATTATTGATTCTATTCAGACGATCATGAGTCCGGAGATTTCGGGTGTTCAGGGCTCGGT
CAGTCAGGTTCGAGAGGTCACTGCCGAATTGCTGCAGCTTGCAAAGTCTAATCATATCGCTACCTTTATCGTGGGCCATG
TGACCAAGGAGGGGACCCTAGCAGGGCCCCGCATGCTGGAGCATATGGTTGATACTGTGCTTTATTTTGAAGGGGAAAGA
CACCACACCTTCCGAATTCTGCGAGCTGTTAAAAACCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGCGGTCTGGTGGAGGTTCTCAACCCCAGTCAGGTTTTCTTAGAGGAGCGTCTGGACGGCGCAACAGGCTCGGCTGTTG
TCGTTACAATGGAGGGGAGCAGACCGATTTTAGCTGAGGTGCAGGCCTTGGTGACACCGACTGTTTTTGGTAATGCTAGA
CGAACGACAACTGGGTTGGACTTTAATCGTGTTAGTCTGATTATGGCTGTCTTGGAAAAGCGATGTGGGCTGCTGCTACA
AAATCAAGATGCCTATCTCAAGTCAGCAGGCGGTGTGAAGCTAGATGAGCCTGCTATTGACTTGGCAGTTGCTGTGGCCA
TTGCCTCTAGCTACAAGGAAAAACCAACCAACCCTCAGGAGGCCTTTTTGGGAGAGATTGGCTTGACTGGTGATATTCGG
CGTGTGACCCGTATTGAGCAGCGGATCAATGAGGCTGCTAAGCTTGGCTTTACCAAGCTTTACGCTCCGAAAAGCTCATT
GCAGGGGATTGATCTGCCAAAAGGGATTGAGGTTGTTGGTGTAACGACAGTAGGAGAGGTCTTAAAGGCTGTCTTTACTT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(60-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.735

99.779

0.845
  radA Streptococcus pneumoniae D39

84.735

99.779

0.845
  radA Streptococcus pneumoniae R6

84.735

99.779

0.845
  radA Streptococcus pneumoniae TIGR4

84.735

99.779

0.845
  radA Streptococcus mitis NCTC 12261

84.292

99.779

0.841
  radA Streptococcus mitis SK321

84.292

99.779

0.841
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611

Multiple sequence alignment