Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM61_RS08415 Genome accession   NZ_LS483379
Coordinates   1667143..1667856 (+) Length   237 a.a.
NCBI ID   WP_002992823.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10874     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1662143..1672856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM61_RS08405 (NCTC10874_01659) treC 1663212..1664840 (-) 1629 WP_023610271.1 alpha,alpha-phosphotrehalase -
  DQM61_RS08410 (NCTC10874_01660) treP 1664908..1666932 (-) 2025 WP_023610274.1 PTS system trehalose-specific EIIBC component -
  DQM61_RS08415 (NCTC10874_01661) treR 1667143..1667856 (+) 714 WP_002992823.1 trehalose operon repressor Regulator
  DQM61_RS08425 (NCTC10874_01662) - 1668136..1668473 (-) 338 Protein_1565 winged helix-turn-helix transcriptional regulator -
  DQM61_RS08430 (NCTC10874_01663) - 1668660..1669517 (+) 858 WP_023610268.1 VOC family protein -
  DQM61_RS08435 (NCTC10874_01664) yaaA 1669559..1670290 (+) 732 WP_023610270.1 peroxide stress protein YaaA -
  DQM61_RS08440 (NCTC10874_01665) nrdG 1670464..1671078 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQM61_RS08445 (NCTC10874_01666) - 1671078..1671587 (-) 510 WP_011285262.1 GNAT family N-acetyltransferase -
  DQM61_RS08450 (NCTC10874_01667) - 1671596..1672531 (-) 936 WP_010922750.1 Gfo/Idh/MocA family protein -
  DQM61_RS09030 (NCTC10874_01668) - 1672560..1672706 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27620.79 Da        Isoelectric Point: 9.6307

>NTDB_id=1139303 DQM61_RS08415 WP_002992823.1 1667143..1667856(+) (treR) [Streptococcus pyogenes strain NCTC10874]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1139303 DQM61_RS08415 WP_002992823.1 1667143..1667856(+) (treR) [Streptococcus pyogenes strain NCTC10874]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTATCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675

Multiple sequence alignment