Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   DQM61_RS06070 Genome accession   NZ_LS483379
Coordinates   1177872..1178909 (-) Length   345 a.a.
NCBI ID   WP_023610142.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10874     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1172872..1183909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM61_RS06045 (NCTC10874_01199) - 1172876..1173403 (-) 528 WP_002983837.1 Dps family protein -
  DQM61_RS06050 (NCTC10874_01200) - 1173631..1174257 (+) 627 WP_002983834.1 prepilin peptidase -
  DQM61_RS06055 (NCTC10874_01201) rlmN 1174339..1175418 (-) 1080 WP_002992788.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  DQM61_RS06060 (NCTC10874_01202) - 1175422..1176042 (-) 621 WP_002992791.1 YutD family protein -
  DQM61_RS06065 (NCTC10874_01203) - 1176490..1177467 (-) 978 WP_002994809.1 LacI family DNA-binding transcriptional regulator -
  DQM61_RS06070 (NCTC10874_01204) sepM 1177872..1178909 (-) 1038 WP_023610142.1 SepM family pheromone-processing serine protease Regulator
  DQM61_RS06075 (NCTC10874_01205) coaD 1178896..1179387 (-) 492 WP_002983821.1 pantetheine-phosphate adenylyltransferase -
  DQM61_RS06080 (NCTC10874_01206) rsmD 1179377..1179916 (-) 540 WP_002983819.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DQM61_RS06085 (NCTC10874_01207) asnA 1180039..1181031 (-) 993 WP_002994813.1 aspartate--ammonia ligase -
  DQM61_RS06090 (NCTC10874_01208) arcC 1181344..1182294 (-) 951 WP_002994815.1 carbamate kinase -
  DQM61_RS06095 (NCTC10874_01209) - 1182314..1183645 (-) 1332 WP_011054719.1 dipeptidase -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37544.26 Da        Isoelectric Point: 9.5788

>NTDB_id=1139292 DQM61_RS06070 WP_023610142.1 1177872..1178909(-) (sepM) [Streptococcus pyogenes strain NCTC10874]
MKRLKKIKWWLVGLLALISLLLALFFPLPYYIEMPGGAYDIRTVLQVNGKEDKRKGAYQFVAVGISRASLAQLLYAWLTP
FTEISTAEDTTGGYSDADFLRINQFYMETSQNAAIYQALSLAGKPVTLDYKGVYVLDVNNESTFKGTLHLADTVTGVNGK
QFTSSAELIDYVSHLKLGDEVTVQFTSDNKPKKGVGRIIKLKNGKNGIGIALTDHTSVNSEDTVIFSTKGVGGPSAGLMF
TLDIYDQITKEDLRKGRTIAGTGTIGKDGEVGDIGGAGLKVVAAAEAGADIFFVPNNPVDMEIKKVNPNAISNYEEAKRA
AKRLKTKMKIVPVTTVQEALVYLRK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1139292 DQM61_RS06070 WP_023610142.1 1177872..1178909(-) (sepM) [Streptococcus pyogenes strain NCTC10874]
ATGAAAAGACTTAAAAAAATCAAATGGTGGTTAGTGGGTCTGCTAGCTTTAATCTCTTTGTTGCTAGCGTTATTTTTTCC
GCTACCTTATTATATTGAAATGCCTGGAGGCGCTTACGATATTCGGACTGTCTTACAAGTCAATGGCAAAGAAGACAAAC
GAAAAGGAGCTTACCAGTTTGTTGCAGTGGGCATTAGTCGTGCCAGCCTCGCTCAGCTATTATATGCTTGGCTGACACCG
TTTACTGAAATTAGTACAGCAGAAGATACAACAGGCGGATACAGCGATGCTGATTTCCTTCGAATTAATCAATTTTACAT
GGAAACATCACAAAATGCAGCTATTTATCAAGCTTTATCCTTAGCTGGAAAACCAGTTACATTAGATTATAAAGGCGTAT
ATGTTTTAGACGTAAACAACGAATCTACTTTTAAAGGAACGTTACACTTAGCAGATACTGTAACAGGTGTAAATGGTAAA
CAGTTTACTAGTTCAGCAGAACTTATTGACTATGTTTCTCACCTAAAACTAGGGGATGAAGTTACGGTTCAGTTTACGAG
TGATAATAAGCCTAAAAAAGGAGTTGGCCGTATTATCAAACTGAAAAATGGGAAAAATGGGATTGGCATTGCCTTGACTG
ATCATACAAGTGTCAATTCAGAAGACACAGTGATCTTTAGTACTAAAGGAGTAGGAGGACCTAGTGCTGGTCTAATGTTT
ACTCTTGATATATATGATCAAATAACTAAAGAAGATTTACGCAAGGGCCGTACAATTGCAGGTACAGGAACTATTGGCAA
GGATGGCGAAGTAGGAGATATTGGTGGTGCAGGTCTTAAAGTAGTTGCAGCAGCTGAAGCTGGTGCAGATATATTTTTTG
TTCCGAATAATCCTGTTGATATGGAAATTAAAAAAGTTAATCCAAATGCTATAAGTAATTACGAAGAAGCCAAACGGGCA
GCCAAACGACTAAAGACCAAAATGAAGATTGTTCCTGTTACGACTGTTCAAGAGGCACTGGTTTATCTTCGCAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

68.986

100

0.69


Multiple sequence alignment