Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQM61_RS01490 Genome accession   NZ_LS483379
Coordinates   265872..266798 (+) Length   308 a.a.
NCBI ID   WP_023610151.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10874     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 260872..271798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM61_RS01480 (NCTC10874_00294) amiA 262335..264305 (+) 1971 WP_002992224.1 peptide ABC transporter substrate-binding protein Regulator
  DQM61_RS01485 (NCTC10874_00295) amiC 264370..265872 (+) 1503 WP_002992227.1 ABC transporter permease Regulator
  DQM61_RS01490 (NCTC10874_00296) amiD 265872..266798 (+) 927 WP_023610151.1 oligopeptide ABC transporter permease OppC Regulator
  DQM61_RS01495 (NCTC10874_00297) amiE 266807..267877 (+) 1071 WP_002992231.1 ABC transporter ATP-binding protein Regulator
  DQM61_RS01500 (NCTC10874_00298) amiF 267870..268793 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  DQM61_RS09340 - 268831..268920 (-) 90 WP_109821088.1 IS3 family transposase -
  DQM61_RS09040 - 268941..269120 (-) 180 WP_014635282.1 hypothetical protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34820.73 Da        Isoelectric Point: 8.5670

>NTDB_id=1139268 DQM61_RS01490 WP_023610151.1 265872..266798(+) (amiD) [Streptococcus pyogenes strain NCTC10874]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGGSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1139268 DQM61_RS01490 WP_023610151.1 265872..266798(+) (amiD) [Streptococcus pyogenes strain NCTC10874]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
GTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCCATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCTAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment