Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM97_RS10180 Genome accession   NZ_LS483378
Coordinates   2079471..2080181 (+) Length   236 a.a.
NCBI ID   WP_019775917.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NCTC12279     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2074471..2085181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM97_RS10170 (NCTC12279_02045) treC 2075429..2077054 (-) 1626 WP_019773149.1 alpha,alpha-phosphotrehalase -
  DQM97_RS10175 (NCTC12279_02046) treP 2077255..2079222 (-) 1968 WP_028798447.1 PTS system trehalose-specific EIIBC component -
  DQM97_RS10180 (NCTC12279_02047) treR 2079471..2080181 (+) 711 WP_019775917.1 trehalose operon repressor Regulator
  DQM97_RS10185 (NCTC12279_02048) - 2080503..2080709 (+) 207 WP_002961127.1 hypothetical protein -
  DQM97_RS10190 (NCTC12279_02049) - 2080702..2081271 (+) 570 WP_002961124.1 hypothetical protein -
  DQM97_RS10195 (NCTC12279_02050) - 2081274..2081483 (+) 210 WP_002961122.1 helix-turn-helix transcriptional regulator -
  DQM97_RS10200 (NCTC12279_02051) - 2081486..2081674 (+) 189 WP_002961120.1 hypothetical protein -
  DQM97_RS10210 (NCTC12279_02052) - 2081922..2084558 (-) 2637 WP_004205619.1 ABC transporter permease -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27375.26 Da        Isoelectric Point: 9.7532

>NTDB_id=1139249 DQM97_RS10180 WP_019775917.1 2079471..2080181(+) (treR) [Streptococcus sobrinus strain NCTC12279]
MKKYQVVFRDLEKKINQSDYPADSFLPSEGELAGKYGVSRDTIRKALSLLEKAKLIRKSQGRASLVRRQQHFNFPVSNLT
SYQELVQNLQMNSETKVLSLYRLLVDGDLARVTGFQPGQQVWRIQRQRIVDGASSVLDTDYLLTDFVKRINQTIAQKSIY
NYLEGELGLEIAYAQKEITIEPTSEQDKIWLDVGLEHHVVSVKSKVYLADQAQFQFTESRHILEKFHFIDYARRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1139249 DQM97_RS10180 WP_019775917.1 2079471..2080181(+) (treR) [Streptococcus sobrinus strain NCTC12279]
ATGAAAAAATATCAGGTCGTTTTTAGAGACTTAGAGAAAAAAATTAATCAGAGCGATTATCCTGCCGATTCCTTCCTTCC
CAGCGAAGGGGAGCTGGCTGGGAAGTACGGGGTCAGTCGTGATACCATCCGCAAAGCCCTTAGCCTATTAGAAAAGGCCA
AGCTCATCCGTAAGAGTCAAGGCAGAGCCAGCTTAGTTAGACGGCAACAACACTTTAACTTCCCCGTCTCCAACCTGACC
AGCTATCAGGAATTAGTCCAAAACCTACAAATGAACTCCGAAACCAAGGTCCTCTCCCTCTATCGTCTCCTAGTTGATGG
GGACTTAGCTAGGGTGACAGGTTTCCAGCCTGGTCAACAGGTCTGGCGAATCCAACGTCAGCGAATTGTTGATGGAGCAT
CCTCCGTCCTAGACACCGACTACCTCCTGACTGACTTTGTCAAAAGAATTAACCAAACTATCGCCCAAAAGTCCATCTAC
AACTACTTGGAAGGAGAGTTAGGGCTGGAGATTGCCTATGCCCAAAAAGAAATTACCATTGAGCCGACTAGCGAGCAAGA
CAAAATCTGGCTGGATGTTGGCCTTGAACATCATGTCGTTTCAGTTAAATCCAAGGTCTACTTAGCCGACCAAGCCCAGT
TTCAGTTCACTGAAAGCCGGCACATTCTCGAGAAATTTCACTTCATTGATTACGCTAGACGAAAAAAATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

55.085

100

0.551

Multiple sequence alignment