Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQM97_RS09370 Genome accession   NZ_LS483378
Coordinates   1915236..1915961 (-) Length   241 a.a.
NCBI ID   WP_002960055.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NCTC12279     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1910236..1920961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM97_RS09355 (NCTC12279_01886) trmB 1912414..1913049 (-) 636 WP_002960061.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQM97_RS09360 (NCTC12279_01887) ccrZ 1913050..1913841 (-) 792 WP_002960058.1 cell cycle regulator CcrZ -
  DQM97_RS09365 (NCTC12279_01888) - 1914187..1915233 (-) 1047 WP_002960056.1 ABC transporter permease -
  DQM97_RS09370 (NCTC12279_01889) pptA 1915236..1915961 (-) 726 WP_002960055.1 ABC transporter ATP-binding protein Regulator
  DQM97_RS09375 (NCTC12279_01890) - 1916239..1916658 (+) 420 WP_002960053.1 HIT family protein -
  DQM97_RS09380 (NCTC12279_01891) - 1916655..1916945 (+) 291 WP_002960051.1 hypothetical protein -
  DQM97_RS09385 (NCTC12279_01892) brpA 1917132..1918367 (-) 1236 WP_002960048.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQM97_RS09390 (NCTC12279_01893) - 1918376..1918888 (-) 513 WP_002960047.1 GNAT family N-acetyltransferase -
  DQM97_RS09395 (NCTC12279_01894) tsaE 1918881..1919321 (-) 441 WP_002960046.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQM97_RS09400 (NCTC12279_01895) - 1919495..1920913 (-) 1419 WP_002960044.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26757.23 Da        Isoelectric Point: 4.6733

>NTDB_id=1139244 DQM97_RS09370 WP_002960055.1 1915236..1915961(-) (pptA) [Streptococcus sobrinus strain NCTC12279]
MLKIDKMTGGYRNIPVLKEISFEVPDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGAITIDDLSLAQDKEAYRKKIGFIP
ETPSLYEELTLKEHLETVAMAYDIPTAEALDRAQKLLQLFRLEDKLDWFPVNFSKGMKQKVMIICAFIVQPRLLIVDEPF
LGLDPLAINDLMDLLEEEKAKGTAILMSTHVLDSAQKMCDSFVILHQGQIRAQGTLADLRASFGQADASLNDLYMALTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1139244 DQM97_RS09370 WP_002960055.1 1915236..1915961(-) (pptA) [Streptococcus sobrinus strain NCTC12279]
ATGTTAAAAATAGACAAGATGACAGGAGGCTACCGCAATATTCCTGTCTTAAAAGAGATTTCCTTTGAGGTGCCCGACGG
TCAGCTGGTCGGTCTCATCGGTCTTAATGGGGCTGGGAAATCAACGACCATCAAGGAGATTATTGGGCTTCTAACTCCCT
ATCAGGGGGCTATTACTATTGATGACCTCAGCTTAGCTCAGGACAAGGAAGCCTACCGGAAGAAGATTGGCTTTATTCCA
GAAACGCCCAGCCTCTACGAGGAATTGACTCTGAAAGAGCATCTGGAAACCGTAGCCATGGCTTATGATATTCCGACGGC
TGAGGCCTTGGACCGAGCTCAAAAGCTTCTTCAACTTTTCCGCCTAGAGGATAAATTGGACTGGTTCCCTGTCAACTTTT
CTAAAGGCATGAAGCAGAAGGTTATGATTATCTGTGCCTTCATCGTCCAGCCTCGTCTTTTAATCGTTGATGAGCCTTTC
TTGGGTCTGGACCCCCTAGCCATCAATGATTTGATGGATCTCTTAGAAGAAGAAAAAGCCAAGGGAACCGCCATTCTCAT
GTCCACCCATGTCTTGGATTCGGCCCAAAAGATGTGTGATAGCTTTGTTATCCTCCATCAGGGGCAAATCAGGGCACAAG
GGACTCTGGCGGATTTGCGGGCCAGCTTTGGTCAGGCAGATGCCAGTCTCAATGACCTCTACATGGCTTTGACAAAAGAG
GTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.477

99.17

0.739
  pptA Streptococcus thermophilus LMD-9

73.64

99.17

0.73

Multiple sequence alignment