Detailed information
Bioinformatically predicted
Overview
| Name | rcrR | Type | Regulator |
| Locus tag | DQM97_RS05035 | Genome accession | NZ_LS483378 |
| Coordinates | 1053345..1053773 (+) | Length | 142 a.a. |
| NCBI ID | WP_002959424.1 | Uniprot ID | U2J2W6 |
| Organism | Streptococcus sobrinus strain NCTC12279 | ||
| Function | regulate competence (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1037621..1060001 | 1053345..1053773 | within | 0 |
Gene organization within MGE regions
Location: 1037621..1060001
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM97_RS10920 | - | 1037621..1038004 (+) | 384 | Protein_934 | hypothetical protein | - |
| DQM97_RS04975 (NCTC12279_00997) | - | 1038345..1040081 (+) | 1737 | WP_002962563.1 | ABC transporter ATP-binding protein | - |
| DQM97_RS04980 (NCTC12279_00998) | - | 1040331..1042082 (+) | 1752 | WP_028798405.1 | ABC transporter ATP-binding protein | - |
| DQM97_RS04985 (NCTC12279_00999) | - | 1042250..1043014 (-) | 765 | WP_002963402.1 | NUDIX domain-containing protein | - |
| DQM97_RS04990 (NCTC12279_01000) | pnuC | 1043011..1043832 (-) | 822 | Protein_938 | nicotinamide riboside transporter PnuC | - |
| DQM97_RS04995 (NCTC12279_01001) | - | 1043848..1044954 (-) | 1107 | WP_032798528.1 | AAA family ATPase | - |
| DQM97_RS05000 (NCTC12279_01002) | - | 1045654..1046163 (-) | 510 | WP_002963409.1 | HdeD family acid-resistance protein | - |
| DQM97_RS05005 (NCTC12279_01003) | gdhA | 1046386..1047738 (+) | 1353 | WP_002963410.1 | NADP-specific glutamate dehydrogenase | - |
| DQM97_RS05010 (NCTC12279_01004) | - | 1048332..1048784 (+) | 453 | WP_002959432.1 | LytTR family DNA-binding domain-containing protein | - |
| DQM97_RS05015 (NCTC12279_01005) | - | 1048774..1049217 (+) | 444 | WP_002959430.1 | hypothetical protein | - |
| DQM97_RS05020 (NCTC12279_01006) | - | 1049217..1050062 (+) | 846 | WP_002959428.1 | ABC transporter ATP-binding protein | - |
| DQM97_RS05025 (NCTC12279_01007) | - | 1050043..1050831 (+) | 789 | WP_002959426.1 | ABC transporter permease subunit | - |
| DQM97_RS05030 | - | 1051028..1053123 (-) | 2096 | Protein_946 | surface-anchored 5'-nucleotidase | - |
| DQM97_RS05035 (NCTC12279_01010) | rcrR | 1053345..1053773 (+) | 429 | WP_002959424.1 | MarR family winged helix-turn-helix transcriptional regulator | Regulator |
| DQM97_RS05040 (NCTC12279_01011) | rcrP | 1053781..1055610 (+) | 1830 | WP_002959422.1 | ABC transporter ATP-binding protein | Regulator |
| DQM97_RS05045 (NCTC12279_01012) | rcrQ | 1055600..1057348 (+) | 1749 | WP_028798403.1 | ABC transporter ATP-binding protein | Regulator |
| DQM97_RS05050 (NCTC12279_01013) | - | 1057706..1058341 (+) | 636 | WP_002959419.1 | ABC transporter permease | - |
| DQM97_RS05055 (NCTC12279_01014) | - | 1058331..1059245 (+) | 915 | WP_002959417.1 | glycine betaine ABC transporter substrate-binding protein | - |
| DQM97_RS05060 (NCTC12279_01015) | - | 1059252..1060001 (+) | 750 | WP_019770237.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 16696.60 Da Isoelectric Point: 10.3649
>NTDB_id=1139226 DQM97_RS05035 WP_002959424.1 1053345..1053773(+) (rcrR) [Streptococcus sobrinus strain NCTC12279]
MKDPFDIFRTFINTMETSVQELAKKHGVEHLAGPQGFTVSYLFENRDKEIFIKDIEERLRISKSVASNLIKRMEKNGFIQ
VKPSLKDKRYKQIVLTELGLDKAEKIKVFRSKIEEIILKDIDKKNLEVARRVFLQIKTNLEK
MKDPFDIFRTFINTMETSVQELAKKHGVEHLAGPQGFTVSYLFENRDKEIFIKDIEERLRISKSVASNLIKRMEKNGFIQ
VKPSLKDKRYKQIVLTELGLDKAEKIKVFRSKIEEIILKDIDKKNLEVARRVFLQIKTNLEK
Nucleotide
Download Length: 429 bp
>NTDB_id=1139226 DQM97_RS05035 WP_002959424.1 1053345..1053773(+) (rcrR) [Streptococcus sobrinus strain NCTC12279]
ATGAAAGATCCCTTTGACATTTTCAGAACTTTCATCAATACTATGGAAACTAGTGTCCAAGAGTTGGCCAAAAAGCATGG
GGTGGAGCATTTAGCTGGCCCCCAAGGCTTTACGGTCTCTTATCTTTTTGAAAACCGAGACAAAGAAATTTTCATAAAAG
ACATTGAAGAGAGGCTAAGAATTTCCAAATCTGTCGCTAGTAATCTCATCAAACGGATGGAGAAGAATGGCTTTATCCAA
GTCAAGCCTTCCCTCAAGGACAAACGCTATAAGCAGATTGTTCTGACAGAACTTGGCCTTGATAAGGCTGAGAAGATTAA
GGTATTCCGTTCCAAAATCGAAGAGATTATTCTTAAGGATATTGATAAGAAGAATCTGGAAGTTGCCCGCCGGGTTTTTT
TGCAAATCAAAACTAATTTAGAAAAGTAG
ATGAAAGATCCCTTTGACATTTTCAGAACTTTCATCAATACTATGGAAACTAGTGTCCAAGAGTTGGCCAAAAAGCATGG
GGTGGAGCATTTAGCTGGCCCCCAAGGCTTTACGGTCTCTTATCTTTTTGAAAACCGAGACAAAGAAATTTTCATAAAAG
ACATTGAAGAGAGGCTAAGAATTTCCAAATCTGTCGCTAGTAATCTCATCAAACGGATGGAGAAGAATGGCTTTATCCAA
GTCAAGCCTTCCCTCAAGGACAAACGCTATAAGCAGATTGTTCTGACAGAACTTGGCCTTGATAAGGCTGAGAAGATTAA
GGTATTCCGTTCCAAAATCGAAGAGATTATTCTTAAGGATATTGATAAGAAGAATCTGGAAGTTGCCCGCCGGGTTTTTT
TGCAAATCAAAACTAATTTAGAAAAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rcrR | Streptococcus mutans UA159 |
64.789 |
100 |
0.648 |