Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQM97_RS03165 Genome accession   NZ_LS483378
Coordinates   610965..612770 (+) Length   601 a.a.
NCBI ID   WP_002959464.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NCTC12279     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 605965..617770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM97_RS11045 (NCTC12279_00624) - 606906..607196 (-) 291 WP_021674166.1 hypothetical protein -
  DQM97_RS03145 (NCTC12279_00625) - 607311..608213 (-) 903 WP_028798368.1 lanthionine synthetase LanC family protein -
  DQM97_RS03150 (NCTC12279_00626) - 608223..608874 (-) 652 Protein_573 amino acid ABC transporter permease -
  DQM97_RS03155 - 608893..609704 (-) 812 Protein_574 transporter substrate-binding domain-containing protein -
  DQM97_RS03160 (NCTC12279_00629) - 609972..610952 (+) 981 WP_002959465.1 competence protein CoiA -
  DQM97_RS03165 (NCTC12279_00630) pepF 610965..612770 (+) 1806 WP_002959464.1 oligoendopeptidase F Regulator
  DQM97_RS03170 (NCTC12279_00631) typA 612970..614817 (+) 1848 WP_019770960.1 translational GTPase TypA -
  DQM97_RS03175 (NCTC12279_00632) - 615147..615449 (+) 303 WP_002959460.1 DUF3165 family protein -
  DQM97_RS03180 (NCTC12279_00633) murD 615771..617126 (+) 1356 WP_002959459.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68607.52 Da        Isoelectric Point: 4.5290

>NTDB_id=1139219 DQM97_RS03165 WP_002959464.1 610965..612770(+) (pepF) [Streptococcus sobrinus strain NCTC12279]
MTDNRALIDEKYKWDLSSIFASDQDWEAQYQGLADAIEQAQDLSGHLAQSAQDLLRVTQTYLNLARCLEKVFVYASMKND
QDTTVATYQELAAKATSLSAKYSQAFAFFEPEVLALGEGKFAEFLQEESELGLYRHFFGQIFSQQAHVLNQEKEELLAQA
QEVLEAGAETYEILDNADISFPSVLDEEGQEVDLSHGNFITLMESKDRRVRQAAYEAYYSTYQQFQHTYAKTLATTVKQH
NFSAKVRHYDSARQAAMEANHIPEGVYDILLSTVHKYLPLLRGYMSLRQEILGLDDLKMYDVYTPLSKLDMTYTYEDAKG
KALEVLSVFGLDYQARVEEALSQGWIDVAANKGKRSGAYSGGSYDTKAFILLNWQDTLDNLYTLVHEMGHSMHSTFTREN
QPYVYGDYSIFLAEIASTTNENIMTETLLKEAKDDKERFALLNYYLDSFKGTVFRQTQFAEFEQAIHEADAKGQVLTSQY
LNELYADLNQAYYGLPKEDNPQIQYEWARIPHFYYNFYVYQYATGFAAASYLAEKIVHGNQADKARYLDYLKAGSSAYPL
EVIAKAGVDMTQADYLEGAFQVFAKRLEELESLVKQGVHRE

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1139219 DQM97_RS03165 WP_002959464.1 610965..612770(+) (pepF) [Streptococcus sobrinus strain NCTC12279]
ATGACAGATAACCGTGCACTTATTGATGAGAAGTACAAGTGGGATTTGAGCAGTATTTTTGCCAGCGACCAGGACTGGGA
GGCCCAATATCAGGGCCTAGCAGATGCTATCGAGCAGGCCCAAGACCTGTCAGGCCACTTGGCCCAGTCAGCCCAAGACT
TATTAAGAGTTACCCAGACTTATTTAAACCTGGCTCGTTGCCTGGAGAAGGTCTTTGTTTATGCTTCCATGAAAAATGAC
CAGGACACGACAGTAGCCACTTATCAGGAGTTGGCAGCTAAGGCGACAAGTCTGTCAGCTAAGTACAGTCAGGCCTTTGC
CTTTTTTGAGCCAGAAGTATTGGCCTTGGGAGAAGGGAAGTTTGCTGAATTTTTGCAGGAGGAATCAGAATTAGGTCTCT
ACCGGCATTTCTTTGGGCAAATCTTCTCCCAACAGGCCCATGTCCTAAATCAAGAAAAAGAAGAGCTCTTAGCTCAGGCT
CAGGAGGTTCTTGAGGCGGGGGCGGAAACCTATGAGATTCTGGACAATGCGGACATCAGTTTTCCAAGCGTCCTTGATGA
GGAAGGTCAAGAAGTTGACTTGAGCCATGGTAATTTTATCACCCTGATGGAATCCAAGGACAGGCGGGTTCGGCAGGCTG
CCTATGAAGCCTATTACAGTACCTACCAGCAGTTTCAGCATACCTATGCTAAGACCCTGGCCACGACTGTCAAGCAGCAT
AATTTTTCGGCCAAGGTTCGCCACTATGACTCTGCTCGTCAGGCAGCTATGGAGGCCAATCATATCCCAGAAGGGGTCTA
TGACATCCTCCTAAGTACGGTCCACAAGTATTTGCCTCTCTTGCGAGGCTACATGAGCTTGCGGCAGGAAATTTTGGGCT
TGGATGATTTGAAAATGTATGATGTCTACACGCCCCTGTCAAAACTGGATATGACCTACACTTACGAGGATGCCAAAGGC
AAGGCTCTAGAAGTCTTGTCGGTCTTTGGCCTTGATTACCAGGCACGAGTAGAAGAGGCCCTGTCCCAGGGCTGGATTGA
TGTTGCAGCCAATAAGGGCAAACGCTCGGGAGCATATTCGGGTGGCTCCTATGATACCAAGGCTTTTATCCTGCTCAACT
GGCAGGATACCCTGGACAATCTCTACACCCTGGTCCATGAGATGGGCCACAGTATGCATTCGACCTTTACCCGAGAAAAT
CAGCCCTATGTCTACGGAGATTATTCTATCTTCTTGGCTGAGATTGCTTCGACGACCAATGAAAATATCATGACCGAGAC
CCTGCTTAAGGAAGCCAAGGACGACAAGGAACGCTTTGCCCTGCTCAATTATTATCTGGACAGTTTCAAGGGGACGGTTT
TTCGTCAGACACAGTTTGCGGAATTTGAGCAAGCTATTCATGAAGCTGATGCTAAGGGTCAGGTCTTGACCAGTCAGTAC
CTCAATGAGCTTTATGCTGACCTCAACCAGGCCTACTATGGTCTGCCCAAGGAAGACAATCCTCAAATTCAGTACGAGTG
GGCTCGGATTCCCCATTTTTACTATAATTTTTATGTCTATCAATATGCGACGGGATTTGCAGCAGCCAGTTATCTGGCTG
AGAAAATTGTCCATGGTAATCAGGCCGACAAGGCCCGCTATTTGGATTATCTCAAAGCAGGTAGTTCGGCCTATCCCTTA
GAAGTCATCGCCAAGGCTGGGGTTGATATGACTCAAGCCGACTACTTAGAGGGGGCCTTTCAAGTCTTTGCTAAACGCCT
GGAAGAATTGGAAAGCCTAGTTAAACAGGGAGTGCATAGGGAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

65.275

99.667

0.651

Multiple sequence alignment