Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | DQM54_RS09970 | Genome accession | NZ_LS483375 |
| Coordinates | 1997303..1999732 (-) | Length | 809 a.a. |
| NCBI ID | WP_111724200.1 | Uniprot ID | - |
| Organism | Streptococcus gordonii strain NCTC3165 | ||
| Function | degradation of ComW (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1992303..2004732
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM54_RS09945 (NCTC3165_01979) | dusB | 1992436..1993413 (+) | 978 | WP_008809915.1 | tRNA dihydrouridine synthase DusB | - |
| DQM54_RS09950 (NCTC3165_01980) | - | 1993452..1994126 (-) | 675 | WP_008809916.1 | DUF6287 domain-containing protein | - |
| DQM54_RS09955 (NCTC3165_01981) | - | 1994362..1995150 (-) | 789 | WP_111724197.1 | NUDIX domain-containing protein | - |
| DQM54_RS09960 (NCTC3165_01982) | pnuC | 1995194..1996009 (-) | 816 | WP_111724198.1 | nicotinamide riboside transporter PnuC | - |
| DQM54_RS09965 (NCTC3165_01983) | - | 1996031..1997089 (-) | 1059 | WP_111724199.1 | AAA family ATPase | - |
| DQM54_RS09970 (NCTC3165_01984) | clpC | 1997303..1999732 (-) | 2430 | WP_111724200.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| DQM54_RS09975 (NCTC3165_01985) | - | 1999739..2000197 (-) | 459 | WP_061601415.1 | CtsR family transcriptional regulator | - |
| DQM54_RS09980 (NCTC3165_01986) | - | 2000516..2000866 (+) | 351 | WP_111724201.1 | hypothetical protein | - |
| DQM54_RS09985 (NCTC3165_01987) | tsf | 2000974..2002017 (-) | 1044 | WP_012130978.1 | translation elongation factor Ts | - |
| DQM54_RS09990 (NCTC3165_01988) | rpsB | 2002096..2002878 (-) | 783 | WP_008809924.1 | 30S ribosomal protein S2 | - |
Sequence
Protein
Download Length: 809 a.a. Molecular weight: 90100.85 Da Isoelectric Point: 6.5942
>NTDB_id=1139156 DQM54_RS09970 WP_111724200.1 1997303..1999732(-) (clpC) [Streptococcus gordonii strain NCTC3165]
MKYSKALIVSIEEAQQLASHFESEYLESWHLLIAFSNYPYSVAGSVLNDYPLEIDHFEDAAYHVVGKSYQKEGQFSILPF
SHRLTTLFKEAKAIAEATHAKEVGTEHILYAIISDRGTLATRILEFVGFSYEDKEGVLRINDLRRNLEQKSGWTKNDLKA
IRSLHKGFNQAKQNMANMMGMPPTQSGGLEDYTRDLTELARSGQLDPVVGRDQEISRMIQVLSRKTKNNPVLVGDAGVGK
TALAFGLAQRVASGQVPHELAKMRVLELDLMNVVAGTRFRGDFEERMNNIIDDIEKDGKVILFIDELHTIMGSGSGIDST
MDAANILKPALARGTLRTIGATTQEEYQKHIEKDAALSRRFAKISIEEPSVADSIAILKGLKENYEAHHKVTITDQAIET
AVKYAHRYLTSKHLPDSAIDLLDEASATVRNNGPQSHAQEDLSPADRAIIAGQFNKLGRLIKEENQPLSSNLKVEETDIL
TTLSRLSGIPVQKLTQTDAKKYLHLEEELHKRVIGQDEAISAISRAIRRNQSGIRANKRPIGTFMFLGPTGVGKTELAKA
LAETLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKIDFSNTIIIMTSNLGATSLRDDKTVGFGARDIRLDHANMEKRMLEELKKTYRPEFINRIDEKVVFHSLSAD
HMQEVVKVMVKPLVASLAEKNIQLKFQASALKLLAKEGYDVEMGARPLRRTLQTKVEDKLAELLLTGDLQAGQTLKVGVK
AGQLKFDIA
MKYSKALIVSIEEAQQLASHFESEYLESWHLLIAFSNYPYSVAGSVLNDYPLEIDHFEDAAYHVVGKSYQKEGQFSILPF
SHRLTTLFKEAKAIAEATHAKEVGTEHILYAIISDRGTLATRILEFVGFSYEDKEGVLRINDLRRNLEQKSGWTKNDLKA
IRSLHKGFNQAKQNMANMMGMPPTQSGGLEDYTRDLTELARSGQLDPVVGRDQEISRMIQVLSRKTKNNPVLVGDAGVGK
TALAFGLAQRVASGQVPHELAKMRVLELDLMNVVAGTRFRGDFEERMNNIIDDIEKDGKVILFIDELHTIMGSGSGIDST
MDAANILKPALARGTLRTIGATTQEEYQKHIEKDAALSRRFAKISIEEPSVADSIAILKGLKENYEAHHKVTITDQAIET
AVKYAHRYLTSKHLPDSAIDLLDEASATVRNNGPQSHAQEDLSPADRAIIAGQFNKLGRLIKEENQPLSSNLKVEETDIL
TTLSRLSGIPVQKLTQTDAKKYLHLEEELHKRVIGQDEAISAISRAIRRNQSGIRANKRPIGTFMFLGPTGVGKTELAKA
LAETLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKIDFSNTIIIMTSNLGATSLRDDKTVGFGARDIRLDHANMEKRMLEELKKTYRPEFINRIDEKVVFHSLSAD
HMQEVVKVMVKPLVASLAEKNIQLKFQASALKLLAKEGYDVEMGARPLRRTLQTKVEDKLAELLLTGDLQAGQTLKVGVK
AGQLKFDIA
Nucleotide
Download Length: 2430 bp
>NTDB_id=1139156 DQM54_RS09970 WP_111724200.1 1997303..1999732(-) (clpC) [Streptococcus gordonii strain NCTC3165]
ATGAAATATTCAAAAGCCTTGATTGTTAGTATAGAAGAGGCCCAGCAACTGGCTAGTCATTTTGAATCTGAGTATTTAGA
GTCATGGCATCTCTTGATTGCTTTTTCTAATTATCCGTACAGCGTAGCAGGCTCAGTTTTAAACGATTATCCGCTAGAAA
TTGATCATTTTGAGGATGCTGCTTACCATGTAGTAGGAAAGTCTTATCAGAAGGAAGGGCAATTTAGTATCCTGCCTTTT
TCTCATCGCTTGACGACTCTTTTTAAGGAGGCAAAAGCTATAGCCGAAGCTACTCACGCAAAGGAAGTCGGAACTGAACA
CATCTTATACGCTATCATCAGCGACAGAGGAACCCTAGCAACTCGTATTTTAGAATTTGTCGGCTTTAGTTATGAAGACA
AAGAAGGAGTCTTGCGTATTAATGATTTGCGGAGAAACCTGGAACAAAAGTCTGGCTGGACTAAGAATGATTTAAAAGCA
ATCCGCAGTCTTCATAAAGGTTTTAATCAAGCCAAGCAAAACATGGCAAACATGATGGGGATGCCACCTACTCAGAGTGG
TGGTCTAGAAGATTACACACGAGACTTGACGGAATTAGCTCGTTCAGGTCAGCTAGATCCTGTTGTTGGTCGAGATCAGG
AAATCTCTCGGATGATTCAGGTTCTCAGTCGCAAGACGAAGAATAACCCTGTCTTGGTTGGGGATGCTGGAGTTGGTAAA
ACTGCTCTAGCTTTCGGTTTGGCCCAGCGTGTAGCTTCTGGTCAAGTTCCGCACGAACTAGCCAAAATGCGGGTTTTAGA
GCTTGATTTAATGAATGTAGTGGCAGGGACTCGTTTCCGTGGGGATTTTGAAGAACGTATGAACAATATCATTGACGATA
TTGAGAAAGATGGTAAGGTCATCCTCTTTATCGATGAGCTTCATACGATTATGGGGTCTGGTAGCGGTATTGACTCTACG
ATGGATGCTGCGAATATCCTTAAACCTGCTCTGGCTCGCGGAACACTGCGTACGATAGGAGCTACAACTCAAGAAGAATA
CCAAAAGCATATTGAAAAAGACGCTGCTCTATCTCGACGCTTCGCTAAGATCAGCATTGAAGAGCCAAGTGTGGCTGACA
GCATTGCTATCCTGAAGGGGCTAAAAGAAAACTATGAAGCCCATCATAAGGTAACGATTACAGATCAAGCAATTGAAACA
GCTGTGAAATATGCTCATCGTTACTTGACAAGCAAGCATCTGCCGGATTCAGCAATTGATCTGTTAGATGAAGCTAGTGC
TACAGTGCGTAACAATGGTCCCCAGAGTCATGCACAAGAGGATTTGAGTCCAGCAGATCGAGCAATTATAGCTGGTCAGT
TCAATAAGCTTGGTCGCTTGATCAAGGAAGAAAATCAACCTCTATCAAGTAATTTGAAGGTAGAGGAAACAGATATTCTG
ACAACTCTCAGTCGCCTGTCTGGTATTCCAGTCCAAAAATTGACTCAGACAGATGCTAAAAAATATTTGCACTTAGAAGA
AGAATTGCATAAGCGGGTGATTGGCCAAGATGAAGCTATATCAGCTATTAGTCGCGCAATTCGTCGTAATCAGTCAGGTA
TTCGAGCGAATAAGCGACCGATTGGTACCTTTATGTTCTTGGGTCCAACTGGGGTTGGTAAGACCGAGTTGGCTAAGGCT
CTGGCAGAAACCCTCTTTGACGACGAATCAGCTCTCATTCGTTTTGATATGAGTGAATACATGGAGAAATTTGCAGCTAG
TCGTCTCAACGGAGCGCCTCCAGGTTATGTCGGCTATGAAGAAGGGGGCGAATTGACAGAGAAAGTTCGCAACAGACCTT
ATTCTGTTCTCTTATTTGACGAAGTTGAAAAAGCCCATCCGGATATTTTCAATGTCCTTCTGCAGGTTTTAGATGATGGT
GTATTGACTGATAGTAAGGGACGAAAGATTGATTTTTCAAATACGATTATTATCATGACCAGCAATCTAGGAGCAACCAG
TTTGCGTGATGATAAGACAGTCGGCTTTGGGGCTCGCGACATCCGTTTAGACCATGCAAATATGGAAAAACGAATGTTAG
AAGAGCTCAAAAAGACATACCGTCCAGAATTTATTAACCGGATTGATGAAAAAGTCGTCTTCCATAGCTTGTCAGCAGAC
CATATGCAGGAGGTTGTCAAAGTGATGGTTAAACCTCTGGTTGCCAGTCTAGCTGAAAAGAATATCCAATTAAAATTCCA
AGCTAGTGCCTTGAAACTACTAGCTAAAGAAGGATATGATGTAGAAATGGGGGCTAGACCTCTTCGTAGGACTCTGCAAA
CCAAAGTTGAAGACAAACTAGCAGAACTGCTATTAACTGGTGATTTACAAGCTGGTCAGACCTTGAAAGTGGGGGTTAAG
GCAGGTCAGTTGAAGTTTGATATAGCCTAA
ATGAAATATTCAAAAGCCTTGATTGTTAGTATAGAAGAGGCCCAGCAACTGGCTAGTCATTTTGAATCTGAGTATTTAGA
GTCATGGCATCTCTTGATTGCTTTTTCTAATTATCCGTACAGCGTAGCAGGCTCAGTTTTAAACGATTATCCGCTAGAAA
TTGATCATTTTGAGGATGCTGCTTACCATGTAGTAGGAAAGTCTTATCAGAAGGAAGGGCAATTTAGTATCCTGCCTTTT
TCTCATCGCTTGACGACTCTTTTTAAGGAGGCAAAAGCTATAGCCGAAGCTACTCACGCAAAGGAAGTCGGAACTGAACA
CATCTTATACGCTATCATCAGCGACAGAGGAACCCTAGCAACTCGTATTTTAGAATTTGTCGGCTTTAGTTATGAAGACA
AAGAAGGAGTCTTGCGTATTAATGATTTGCGGAGAAACCTGGAACAAAAGTCTGGCTGGACTAAGAATGATTTAAAAGCA
ATCCGCAGTCTTCATAAAGGTTTTAATCAAGCCAAGCAAAACATGGCAAACATGATGGGGATGCCACCTACTCAGAGTGG
TGGTCTAGAAGATTACACACGAGACTTGACGGAATTAGCTCGTTCAGGTCAGCTAGATCCTGTTGTTGGTCGAGATCAGG
AAATCTCTCGGATGATTCAGGTTCTCAGTCGCAAGACGAAGAATAACCCTGTCTTGGTTGGGGATGCTGGAGTTGGTAAA
ACTGCTCTAGCTTTCGGTTTGGCCCAGCGTGTAGCTTCTGGTCAAGTTCCGCACGAACTAGCCAAAATGCGGGTTTTAGA
GCTTGATTTAATGAATGTAGTGGCAGGGACTCGTTTCCGTGGGGATTTTGAAGAACGTATGAACAATATCATTGACGATA
TTGAGAAAGATGGTAAGGTCATCCTCTTTATCGATGAGCTTCATACGATTATGGGGTCTGGTAGCGGTATTGACTCTACG
ATGGATGCTGCGAATATCCTTAAACCTGCTCTGGCTCGCGGAACACTGCGTACGATAGGAGCTACAACTCAAGAAGAATA
CCAAAAGCATATTGAAAAAGACGCTGCTCTATCTCGACGCTTCGCTAAGATCAGCATTGAAGAGCCAAGTGTGGCTGACA
GCATTGCTATCCTGAAGGGGCTAAAAGAAAACTATGAAGCCCATCATAAGGTAACGATTACAGATCAAGCAATTGAAACA
GCTGTGAAATATGCTCATCGTTACTTGACAAGCAAGCATCTGCCGGATTCAGCAATTGATCTGTTAGATGAAGCTAGTGC
TACAGTGCGTAACAATGGTCCCCAGAGTCATGCACAAGAGGATTTGAGTCCAGCAGATCGAGCAATTATAGCTGGTCAGT
TCAATAAGCTTGGTCGCTTGATCAAGGAAGAAAATCAACCTCTATCAAGTAATTTGAAGGTAGAGGAAACAGATATTCTG
ACAACTCTCAGTCGCCTGTCTGGTATTCCAGTCCAAAAATTGACTCAGACAGATGCTAAAAAATATTTGCACTTAGAAGA
AGAATTGCATAAGCGGGTGATTGGCCAAGATGAAGCTATATCAGCTATTAGTCGCGCAATTCGTCGTAATCAGTCAGGTA
TTCGAGCGAATAAGCGACCGATTGGTACCTTTATGTTCTTGGGTCCAACTGGGGTTGGTAAGACCGAGTTGGCTAAGGCT
CTGGCAGAAACCCTCTTTGACGACGAATCAGCTCTCATTCGTTTTGATATGAGTGAATACATGGAGAAATTTGCAGCTAG
TCGTCTCAACGGAGCGCCTCCAGGTTATGTCGGCTATGAAGAAGGGGGCGAATTGACAGAGAAAGTTCGCAACAGACCTT
ATTCTGTTCTCTTATTTGACGAAGTTGAAAAAGCCCATCCGGATATTTTCAATGTCCTTCTGCAGGTTTTAGATGATGGT
GTATTGACTGATAGTAAGGGACGAAAGATTGATTTTTCAAATACGATTATTATCATGACCAGCAATCTAGGAGCAACCAG
TTTGCGTGATGATAAGACAGTCGGCTTTGGGGCTCGCGACATCCGTTTAGACCATGCAAATATGGAAAAACGAATGTTAG
AAGAGCTCAAAAAGACATACCGTCCAGAATTTATTAACCGGATTGATGAAAAAGTCGTCTTCCATAGCTTGTCAGCAGAC
CATATGCAGGAGGTTGTCAAAGTGATGGTTAAACCTCTGGTTGCCAGTCTAGCTGAAAAGAATATCCAATTAAAATTCCA
AGCTAGTGCCTTGAAACTACTAGCTAAAGAAGGATATGATGTAGAAATGGGGGCTAGACCTCTTCGTAGGACTCTGCAAA
CCAAAGTTGAAGACAAACTAGCAGAACTGCTATTAACTGGTGATTTACAAGCTGGTCAGACCTTGAAAGTGGGGGTTAAG
GCAGGTCAGTTGAAGTTTGATATAGCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Streptococcus pneumoniae Rx1 |
78.052 |
100 |
0.782 |
| clpC | Streptococcus pneumoniae D39 |
78.052 |
100 |
0.782 |
| clpC | Streptococcus pneumoniae TIGR4 |
78.052 |
100 |
0.782 |
| clpC | Streptococcus mutans UA159 |
67.5 |
98.888 |
0.667 |
| clpC | Streptococcus thermophilus LMG 18311 |
66.176 |
100 |
0.667 |
| clpC | Streptococcus thermophilus LMD-9 |
66.054 |
100 |
0.666 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
48.626 |
100 |
0.503 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
45.06 |
100 |
0.462 |
| clpE | Streptococcus pneumoniae Rx1 |
46.13 |
79.852 |
0.368 |
| clpE | Streptococcus pneumoniae D39 |
46.13 |
79.852 |
0.368 |
| clpE | Streptococcus pneumoniae R6 |
46.13 |
79.852 |
0.368 |
| clpE | Streptococcus pneumoniae TIGR4 |
46.13 |
79.852 |
0.368 |
| clpE | Streptococcus mutans UA159 |
47.436 |
77.132 |
0.366 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
44.613 |
81.459 |
0.363 |