Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DQM54_RS08720 Genome accession   NZ_LS483375
Coordinates   1761366..1763132 (-) Length   588 a.a.
NCBI ID   WP_111724093.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1756366..1768132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS08705 (NCTC3165_01732) - 1756460..1758073 (-) 1614 WP_060970818.1 CTP synthase -
  DQM54_RS08710 (NCTC3165_01733) manA 1758514..1759458 (-) 945 WP_111724091.1 mannose-6-phosphate isomerase, class I -
  DQM54_RS08715 (NCTC3165_01734) rcrQ 1759619..1761376 (-) 1758 WP_111724092.1 ABC transporter ATP-binding protein Regulator
  DQM54_RS08720 (NCTC3165_01735) rcrP 1761366..1763132 (-) 1767 WP_111724093.1 ABC transporter ATP-binding protein Regulator
  DQM54_RS08725 (NCTC3165_01736) - 1763125..1763583 (-) 459 WP_012130789.1 MarR family winged helix-turn-helix transcriptional regulator -
  DQM54_RS08730 (NCTC3165_01737) - 1763855..1764424 (-) 570 WP_111724094.1 hypothetical protein -
  DQM54_RS08735 (NCTC3165_01738) - 1764434..1764844 (-) 411 WP_111724095.1 peptide deformylase -
  DQM54_RS08740 (NCTC3165_01739) scrK 1764893..1765792 (-) 900 WP_045773521.1 fructokinase ScrK -
  DQM54_RS08745 (NCTC3165_01740) - 1766033..1766557 (-) 525 WP_111724310.1 hypothetical protein -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 64977.24 Da        Isoelectric Point: 5.3083

>NTDB_id=1139140 DQM54_RS08720 WP_111724093.1 1761366..1763132(-) (rcrP) [Streptococcus gordonii strain NCTC3165]
MFKLFKRLTSKEIGLILMTVVFICLTVYLELEVPTYMSEITTLLQTPGTTTGELWVPGLKMLGLSFASLFSLVIAGFVSS
RMASSYTTRLREDIFNRVLDYSDSEIKKFSIPSLLTRTTNDITQIQVFIAMGLQVVFRGSIMAIWAMTKVVGKSDAWLIA
VLVAVAAIILMTIVLVTLAFPKQSIVQTLTDKLNSVTRESLTGIRVVRAYNAEDYQDAKFGAANDEVTSLNIFINRFMSL
FNPIMSGISSGLTLAIYWIGAYLIHSAASADKLGLFSDMVVFMSYGMQVVIGFLLMGALFIVLPRTLVSAGRINKVLALD
SSIKEKDQAQTEGQSKGQVTFEDVSFRYAKNSEAVIEHVSFTAKAGETIAFIGSTGSGKSTLVNLIPRFYDVTEGRILVD
GVDVRDYELKALRNKVGYIPQKAVLFSGTIASNLDFGESMETPLDEEKMWEALELAQAKSFVEEKEAGLESEVSQGGTNY
SGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRKELAEQTQHMTKLIVAQRISTIMDADQILVLDNGKVVGQGT
HKELLATNEVYQEIAYSQLSKEELENGR

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=1139140 DQM54_RS08720 WP_111724093.1 1761366..1763132(-) (rcrP) [Streptococcus gordonii strain NCTC3165]
ATGTTTAAATTATTTAAACGCTTGACGTCAAAAGAAATCGGCCTGATTTTGATGACAGTTGTTTTTATCTGTCTGACCGT
TTATCTAGAGTTAGAAGTTCCGACTTATATGTCAGAAATTACAACCTTACTACAGACACCGGGGACAACGACAGGAGAGC
TATGGGTACCAGGTTTGAAAATGCTGGGCCTATCTTTTGCCAGCTTGTTCTCCTTGGTAATAGCTGGCTTTGTGTCCTCT
CGGATGGCTTCTAGCTATACTACCCGCTTGCGTGAGGATATTTTTAATCGTGTCTTGGATTATTCTGATTCAGAGATTAA
AAAATTCTCTATCCCTAGTCTTCTGACCAGAACAACCAACGATATTACCCAAATTCAGGTGTTTATCGCTATGGGACTAC
AAGTTGTTTTTCGAGGAAGCATCATGGCGATTTGGGCTATGACGAAGGTTGTTGGCAAATCAGATGCTTGGTTGATCGCT
GTTTTGGTTGCGGTTGCAGCCATTATATTGATGACGATTGTCTTAGTGACTTTGGCTTTTCCAAAGCAATCTATTGTACA
AACCTTGACAGATAAATTAAATAGTGTGACACGTGAGAGTTTGACAGGGATTCGGGTTGTTCGGGCCTATAATGCCGAAG
ATTACCAGGATGCAAAATTTGGTGCAGCAAACGACGAGGTAACTAGCCTTAATATTTTTATTAACCGCTTCATGTCTTTG
TTCAATCCGATTATGAGCGGAATTTCAAGTGGTTTAACGCTGGCTATTTATTGGATTGGAGCTTATTTGATTCATAGCGC
AGCATCTGCTGATAAGCTTGGTCTATTCAGTGATATGGTTGTTTTCATGTCTTATGGTATGCAGGTTGTAATTGGCTTCT
TGCTGATGGGAGCTTTGTTTATTGTTTTACCACGTACCCTTGTTTCGGCTGGACGGATTAACAAAGTGTTAGCACTGGAT
AGCAGTATCAAAGAAAAAGATCAGGCACAGACTGAGGGCCAAAGTAAAGGACAAGTAACTTTTGAAGATGTTTCTTTCCG
TTATGCAAAAAATTCTGAAGCAGTAATTGAGCATGTTAGTTTCACTGCTAAAGCTGGTGAAACAATTGCCTTTATTGGAT
CTACTGGCTCAGGTAAATCAACCCTTGTCAATTTGATACCTCGTTTCTATGATGTGACAGAAGGTAGGATTCTAGTCGAT
GGTGTAGATGTCCGTGACTACGAGCTTAAAGCTCTACGTAATAAGGTAGGGTATATTCCGCAGAAAGCTGTACTTTTCTC
AGGGACAATTGCTTCAAATTTGGACTTTGGAGAAAGCATGGAAACTCCACTGGATGAAGAGAAAATGTGGGAAGCCCTTG
AACTAGCACAAGCCAAATCATTTGTAGAAGAAAAAGAGGCAGGGCTTGAGTCTGAAGTGTCTCAAGGAGGCACCAACTAT
TCTGGTGGTCAACGCCAACGTCTGGCTATTGCGCGTGCATTGGCCCGTAAGCCGGAAATTTTGATATTTGATGATTCTTT
CTCTGCTTTGGACTATAAGACAGATCGTATTTTACGAAAAGAATTGGCAGAACAGACCCAACATATGACAAAACTGATTG
TCGCCCAACGAATTTCCACTATTATGGATGCCGATCAAATCCTAGTTCTAGACAATGGTAAAGTCGTTGGACAAGGTACC
CATAAAGAGTTGTTGGCTACGAATGAAGTGTACCAAGAAATTGCTTATTCACAATTATCAAAGGAGGAACTAGAAAATGG
AAGATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(54-285)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

68.667

100

0.701

Multiple sequence alignment