Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DQM54_RS08715 Genome accession   NZ_LS483375
Coordinates   1759619..1761376 (-) Length   585 a.a.
NCBI ID   WP_111724092.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1754619..1766376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS08690 (NCTC3165_01729) - 1754691..1755572 (-) 882 WP_111724089.1 class II fructose-bisphosphate aldolase -
  DQM54_RS08700 (NCTC3165_01731) - 1755980..1756390 (-) 411 WP_111724090.1 GyrI-like domain-containing protein -
  DQM54_RS08705 (NCTC3165_01732) - 1756460..1758073 (-) 1614 WP_060970818.1 CTP synthase -
  DQM54_RS08710 (NCTC3165_01733) manA 1758514..1759458 (-) 945 WP_111724091.1 mannose-6-phosphate isomerase, class I -
  DQM54_RS08715 (NCTC3165_01734) rcrQ 1759619..1761376 (-) 1758 WP_111724092.1 ABC transporter ATP-binding protein Regulator
  DQM54_RS08720 (NCTC3165_01735) rcrP 1761366..1763132 (-) 1767 WP_111724093.1 ABC transporter ATP-binding protein Regulator
  DQM54_RS08725 (NCTC3165_01736) - 1763125..1763583 (-) 459 WP_012130789.1 MarR family winged helix-turn-helix transcriptional regulator -
  DQM54_RS08730 (NCTC3165_01737) - 1763855..1764424 (-) 570 WP_111724094.1 hypothetical protein -
  DQM54_RS08735 (NCTC3165_01738) - 1764434..1764844 (-) 411 WP_111724095.1 peptide deformylase -
  DQM54_RS08740 (NCTC3165_01739) scrK 1764893..1765792 (-) 900 WP_045773521.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64909.78 Da        Isoelectric Point: 4.8704

>NTDB_id=1139139 DQM54_RS08715 WP_111724092.1 1759619..1761376(-) (rcrQ) [Streptococcus gordonii strain NCTC3165]
MEDKKISLFTQMKPYIKGFQLPFVIAVTGAIISSIITVFGPYKLREITNLITEGLVGEMDLGAISNIGFFLAFLYVVGSL
INYAQGYAISDMIQHFSKRLRTAIAEKINRLPLSYFDSHSQGDTLSRVTNDVDTVGQSLTQSLGTLISSVLLLIAVLFMM
FYTNVVLSFVTIGSVLLGFVFSAVLMAKSQRYFQEQQSNLAAINGYVEEMYSGHNVITSYNGAEKTRLAFNALNQNLYTS
MWKSQFISGIMFPLMNFVGNFGYVMVVIVGATMAINGSISMGTIVAFMVYVRIFSQPLSQIAQGITTLQSASAAMGRVFE
FLAEADMEDDSHKLQQLTNVKGHVQFKDVFFGYNPDKTIIHDFSAEAKAGQKIAIVGPTGAGKTTIVNLLMKFYDIERGQ
IMIDGVDIKDMQRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKDITDQAVVEAAKAVGVHHFIMTLPDGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HDQLMEQGGFYADLYNSQFVEEDQE

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=1139139 DQM54_RS08715 WP_111724092.1 1759619..1761376(-) (rcrQ) [Streptococcus gordonii strain NCTC3165]
ATGGAAGATAAAAAAATATCTTTATTTACCCAGATGAAGCCCTATATTAAAGGTTTCCAGCTTCCTTTTGTCATTGCAGT
AACCGGTGCGATCATCTCTAGTATTATTACAGTCTTTGGTCCCTATAAGTTGCGTGAAATCACAAACTTAATTACAGAAG
GTCTAGTAGGTGAGATGGACTTGGGAGCTATCTCAAATATAGGTTTCTTCCTAGCTTTCCTTTATGTTGTAGGTTCTCTT
ATCAATTATGCGCAGGGTTATGCTATTTCGGATATGATTCAGCACTTTTCAAAACGTTTGAGAACTGCGATTGCAGAGAA
AATCAACCGCCTACCATTAAGTTACTTTGATAGCCATTCGCAAGGCGATACCCTTTCACGTGTGACAAATGATGTAGATA
CAGTTGGACAATCGTTGACACAGAGCTTGGGTACTCTGATTTCTTCGGTCTTACTTTTAATTGCTGTGCTCTTTATGATG
TTTTATACGAATGTTGTACTTTCATTTGTGACGATTGGTTCGGTCTTATTGGGTTTCGTTTTCTCAGCAGTTCTGATGGC
GAAATCTCAGAGATATTTCCAAGAACAGCAAAGTAACCTAGCCGCTATCAATGGTTATGTGGAAGAAATGTACTCCGGGC
ACAATGTTATCACTAGTTACAATGGTGCAGAAAAGACGCGCTTGGCCTTCAATGCCCTCAATCAAAATCTGTATACTAGT
ATGTGGAAGTCACAATTTATTTCAGGAATTATGTTTCCTCTGATGAACTTTGTTGGTAATTTTGGCTATGTGATGGTTGT
GATTGTAGGTGCCACAATGGCTATTAATGGCTCCATTAGCATGGGTACGATTGTAGCTTTCATGGTCTACGTACGAATTT
TTTCACAACCTCTTTCCCAAATTGCCCAGGGAATCACAACACTCCAATCTGCTAGTGCAGCTATGGGACGTGTCTTTGAG
TTTCTAGCAGAAGCAGATATGGAAGATGATTCTCACAAACTTCAACAATTAACAAATGTAAAAGGACATGTCCAGTTTAA
AGATGTCTTCTTTGGTTACAATCCTGATAAGACTATTATTCACGATTTCTCAGCAGAAGCAAAGGCTGGACAAAAAATTG
CAATTGTTGGTCCCACTGGTGCTGGTAAGACAACAATTGTCAACCTACTCATGAAGTTCTATGATATTGAACGTGGGCAA
ATCATGATTGATGGTGTGGATATCAAGGATATGCAACGCTCAGAAGTTCACGATGCTTTCTCTATGGTTCTACAAGATAC
ATGGCTTTTTGAAGGGACTATTAAAGAAAACTTGATCTATAATCAGAAAGATATCACGGACCAAGCAGTTGTTGAAGCTG
CAAAAGCGGTTGGTGTCCACCACTTTATCATGACCTTACCAGACGGTTATGATACGGTTTTGGACGACACAGTCAGTCTT
TCAGTTGGTCAAAAGCAGCTCTTGACTATTGCAAGGGCTTTGCTCAAAGATGCGCCACTCCTTATTTTAGATGAGGCAAC
TTCATCTGTCGATACACGGACGGAAGAATTGATTCAAAAAGCGATGGACAAGCTGATGGAAGGCAGGACTTCCTTTGTCA
TTGCTCACCGCCTATCCACTATTCGCAATGCTGATTTGATCCTAGTCATGCGTGATGGGAATATTATCGAGCAAGGAAAC
CATGACCAGCTCATGGAGCAGGGAGGTTTCTACGCTGATCTTTACAACAGTCAGTTCGTTGAAGAAGATCAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(24-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

70.79

99.487

0.704

Multiple sequence alignment