Detailed information NTG0113911

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: Q426_RS07345
• Genome accession: NZ_CP006770
• Coordinates: 1578050..1578985 (-)
• Length: 311 a.a.
• NCBI ID: WP_012514940.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus CY
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1573050..1583985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q426_RS07320 (Q426_07795)	tsaD	1573088..1574104 (-)	1017	WP_038674573.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
Q426_RS07325 (Q426_07800)	rimI	1574094..1574519 (-)	426	WP_014622281.1	ribosomal protein S18-alanine N-acetyltransferase	-
Q426_RS07330 (Q426_07805)	tsaB	1574522..1575220 (-)	699	WP_014622280.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
Q426_RS07335 (Q426_07810)	-	1575506..1575736 (+)	231	WP_014622279.1	DNA-dependent RNA polymerase subunit epsilon	-
Q426_RS07340 (Q426_07815)	rnjA	1575738..1577420 (+)	1683	WP_012514941.1	ribonuclease J1	-
Q426_RS07345 (Q426_07820)	amiF	1578050..1578985 (-)	936	WP_012514940.1	ABC transporter ATP-binding protein	Regulator
Q426_RS07350 (Q426_07825)	oppD	1578985..1580031 (-)	1047	WP_014622278.1	ABC transporter ATP-binding protein	Regulator
Q426_RS07355 (Q426_07830)	-	1580043..1581074 (-)	1032	WP_014622277.1	ABC transporter permease	-
Q426_RS07360 (Q426_07835)	-	1581084..1581998 (-)	915	WP_012514937.1	ABC transporter permease	-
Q426_RS07365 (Q426_07840)	-	1582165..1583823 (-)	1659	WP_012678547.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35067.17 Da
• Isoelectric Point: 8.3565

>NTDB_id=113911 Q426_RS07345 WP_012514940.1 1578050..1578985(-) (amiF) [Streptococcus equi subsp. zooepidemicus CY]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERRRIAEVYDPSQELDGQERQMYEITPGHFVLATQAEADQYRAERGL

Nucleotide

• Length: 936 bp

>NTDB_id=113911 Q426_RS07345 WP_012514940.1 1578050..1578985(-) (amiF) [Streptococcus equi subsp. zooepidemicus CY]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACGA
CAGTTGGTCGAGCTATTTTGAAACTGTATGACATTAGTGATGGTGAGATTATCTTTAACGGAGAAAATGTCTCCCAATTA
AAAGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCACAAATGATCTTCCAAGATCCTCAGGCTAGTCTGAACGGCCGTAT
GAAAATTAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AGGAGCTGTTAAAGCTTGTTGGGCTCAATCAGGACCATTTGACGCGCTACCCACATGAATTTTCCGGTGGTCAACGCCAG
CGCATTGGCATTGCGCGTGCCTTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAGAAGCGCGGCTTGACCTATCTCTTTATCGCACACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGAACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAG
GCGCATTGCAGAGGTTTATGATCCTAGTCAAGAGCTAGATGGCCAAGAGCGGCAAATGTATGAAATCACTCCTGGGCATT
TTGTTTTAGCGACGCAGGCCGAAGCCGATCAGTATCGAGCAGAGCGTGGCCTCTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.922	98.392	0.531
amiF	Streptococcus thermophilus LMG 18311	53.595	98.392	0.527
amiF	Streptococcus salivarius strain HSISS4	53.268	98.392	0.524