Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQM54_RS00825 Genome accession   NZ_LS483375
Coordinates   172421..173782 (+) Length   453 a.a.
NCBI ID   WP_111723160.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 167421..178782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS00785 (NCTC3165_00159) - 167517..169286 (+) 1770 WP_111723157.1 ABC transporter ATP-binding protein -
  DQM54_RS00790 (NCTC3165_00160) - 169465..170154 (+) 690 WP_045634457.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DQM54_RS00800 (NCTC3165_00161) - 170429..170878 (+) 450 WP_045505259.1 8-oxo-dGTP diphosphatase -
  DQM54_RS00810 (NCTC3165_00162) - 170963..171406 (+) 444 WP_008808193.1 dUTP diphosphatase -
  DQM54_RS00815 (NCTC3165_00163) - 171416..171874 (+) 459 WP_045772688.1 isochorismatase family protein -
  DQM54_RS00820 (NCTC3165_00164) - 171893..172408 (+) 516 WP_111723159.1 histidine phosphatase family protein -
  DQM54_RS00825 (NCTC3165_00165) radA 172421..173782 (+) 1362 WP_111723160.1 DNA repair protein RadA Machinery gene
  DQM54_RS00830 (NCTC3165_00166) - 173895..174605 (+) 711 WP_008808197.1 TIGR00266 family protein -
  DQM54_RS00835 (NCTC3165_00167) - 174743..175237 (+) 495 WP_008808198.1 beta-class carbonic anhydrase -
  DQM54_RS00840 (NCTC3165_00168) gltX 175387..176844 (+) 1458 WP_111723161.1 glutamate--tRNA ligase -
  DQM54_RS00845 (NCTC3165_00169) - 177020..178219 (+) 1200 WP_008808200.1 argininosuccinate synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49522.81 Da        Isoelectric Point: 5.5895

>NTDB_id=1139098 DQM54_RS00825 WP_111723160.1 172421..173782(+) (radA) [Streptococcus gordonii strain NCTC3165]
MAKKKTTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTEIE
KIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGER
QHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIR
RVNRIEQRINEAAKLGFTKVYAPKNSLNGLKVPDNIQVIGVTTIGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1139098 DQM54_RS00825 WP_111723160.1 172421..173782(+) (radA) [Streptococcus gordonii strain NCTC3165]
ATCGCTAAGAAAAAAACAACCTTTGTCTGTCAAAATTGTGAATACCATTCGCCCAAGTATCTAGGTCGCTGTCCTAATTG
TGGAGCTTGGTCTTCTTTCGTTGAGGAAGTAGAGGCTGCAGAAGTCAAGCATGCTCGTGTTTCCTTGACGGGTGAAAAGA
CCCGACCTATGAAGCTGGCTGAGGTCACTTCGATTGATGTCAACCGGACTAAGACGGAAATGGACGAGTTCAACCGTGTG
CTGGGTGGTGGCGTCGTGCCTGGCAGTCTGGTTCTGATTGGTGGAGATCCTGGTATCGGGAAGTCCACCCTGCTTTTGCA
GGTGTCCACTCAGCTTTCTCAACAGGGTACCGTCCTTTATGTCAGTGGGGAGGAATCAGCTGAGCAGATTAAGTTGCGGG
CGGAACGCCTCGGTGATATTGACAGTGAATTTTACCTCTACGCTGAGACCAATATGCAAAATATCCGCACAGAGATTGAG
AAAATCAAGCCAGATTTTCTGATTATCGACTCTATACAGACGGTGATGTCGCCGGAAATTTCCAGTGTCCAAGGCTCTGT
TTCTCAGGTCCGAGAGGTGACAGCCGAGCTCATGCAGCTGGCCAAGACCAATAATATCGCGACCTTTATTGTTGGTCACA
TGACCAAGGAAGGAACCTTAGCTGGTCCTCGGACGCTAGAGCACATGGTGGATACCGTGCTTTATTTTGAGGGTGAACGT
CAGCATACTTTCCGTATCTTGAGAGCAGTCAAGAACCGTTTTGGCTCGACCAATGAGATTGGCATTTTTGAGATGCAATC
TGGCGGGCTAGTTGAGGTTGTCAATCCCAGTGAAGTCTTTTTAGAAGAGCGCCTGGACGGCGCGACAGGATCTTCTATTG
TCGTGACCATGGAAGGAACGCGGCCAATTTTAGCAGAGGTGCAGGCTTTGGTGACACCGACCATGTTTGGCAATGCCAAG
CGAACCACGACCGGACTGGACTTTAACCGAGCTAGCCTCATCATGGCGGTTCTGGAAAAGAGGGCGGGGCTCCTTCTGCA
AAATCAAGACGCCTATCTCAAATCAGCTGGGGGTGTCAAGCTAGATGAGCCAGCCATTGATTTGGCGGTAGCGGTGGCCA
TTGCTTCCAGCTACAAAGATCTACCTACCAATCCTCAAGAGTGCTTTATCGGTGAAATTGGTCTGACTGGTGAAATCCGT
CGGGTTAACCGTATCGAGCAGCGCATCAACGAAGCGGCAAAGCTGGGCTTCACCAAAGTCTACGCTCCTAAAAACTCTCT
GAACGGCCTCAAAGTTCCAGACAATATCCAAGTCATTGGTGTGACAACGATTGGGGAAGTCTTAAAGAAAGTATTTTCTT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.832

100

0.918
  radA Streptococcus pneumoniae D39

91.611

100

0.916
  radA Streptococcus pneumoniae R6

91.611

100

0.916
  radA Streptococcus pneumoniae Rx1

91.611

100

0.916
  radA Streptococcus mitis SK321

91.611

100

0.916
  radA Streptococcus pneumoniae TIGR4

91.611

100

0.916
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

100

0.629

Multiple sequence alignment