Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   Q426_RS06020 Genome accession   NZ_CP006770
Coordinates   1288024..1289064 (-) Length   346 a.a.
NCBI ID   WP_038674848.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus CY     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1283024..1294064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q426_RS05995 (Q426_06370) - 1283303..1283536 (-) 234 WP_012515231.1 YqgQ family protein -
  Q426_RS06000 (Q426_06375) - 1283912..1284442 (-) 531 WP_014622497.1 Dps family protein -
  Q426_RS06010 (Q426_06385) rlmN 1285724..1286806 (-) 1083 WP_014622494.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  Q426_RS06015 (Q426_06390) - 1286810..1287424 (-) 615 WP_014622493.1 YutD family protein -
  Q426_RS06020 sepM 1288024..1289064 (-) 1041 WP_038674848.1 SepM family pheromone-processing serine protease Regulator
  Q426_RS10435 coaD 1289074..1289538 (-) 465 Protein_1194 pantetheine-phosphate adenylyltransferase -
  Q426_RS06025 (Q426_06405) rsmD 1289528..1290067 (-) 540 WP_014622490.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  Q426_RS06030 (Q426_06410) asnA 1290237..1291229 (-) 993 WP_012515219.1 aspartate--ammonia ligase -
  Q426_RS06035 (Q426_06415) arcC 1291448..1292398 (-) 951 WP_012515218.1 carbamate kinase -
  Q426_RS06040 (Q426_06420) - 1292416..1293747 (-) 1332 WP_014622489.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37579.04 Da        Isoelectric Point: 8.8056

>NTDB_id=113906 Q426_RS06020 WP_038674848.1 1288024..1289064(-) (sepM) [Streptococcus equi subsp. zooepidemicus CY]
MNENNKKFKWWLIGFVALLFLLLTLFFPLPYYIEMPGGAYDIRSVLTVNGKEDKEKGAYQFVVVSLSRATLAKLLYAWLT
PFTEISTMEDTTGGYSDADYLRINRFYMETSQNSAVYQALTLAGKEVSFDYKGVYVLDVSKDSSFKGVLHLADTVTGVNG
KTFTTSADLIDYVSHLTLGDEVQVQFTTAGESKTEKGKIIKLKNGKNGIGITLTDHTQVISGDEVDFSTGGVGGPSAGLM
FTLDIYDQINHEDLRKGRVIAGTGTIGKDGKVGDIGGAGLKVAAAAAAGADIFFVPNNPVDKDVKKANPKAISNYEEAKK
AAKRLKTAMKIIPVKTVQDAISYLKK

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=113906 Q426_RS06020 WP_038674848.1 1288024..1289064(-) (sepM) [Streptococcus equi subsp. zooepidemicus CY]
ATGAATGAAAACAATAAAAAATTTAAATGGTGGCTGATTGGCTTTGTTGCCTTGCTTTTTCTACTGTTGACACTGTTTTT
CCCCTTGCCTTATTATATTGAAATGCCAGGTGGAGCCTATGATATTCGCTCGGTATTGACTGTCAATGGCAAAGAGGATA
AGGAAAAGGGAGCTTATCAGTTTGTTGTGGTGAGCCTCAGTCGGGCTACCTTGGCTAAATTGCTCTATGCTTGGCTAACG
CCTTTCACTGAGATTAGCACCATGGAAGATACTACTGGTGGCTATAGCGATGCTGATTACCTGCGAATTAATCGCTTTTA
TATGGAAACCTCTCAAAACAGCGCTGTTTACCAGGCCCTTACTCTAGCAGGTAAGGAGGTAAGCTTTGATTATAAGGGTG
TTTATGTCTTAGACGTCAGCAAGGATTCTAGCTTTAAAGGTGTGCTGCACCTAGCAGATACAGTGACAGGTGTCAATGGT
AAAACATTTACAACGTCTGCGGATCTGATTGATTATGTTTCTCATTTGACCTTGGGAGATGAGGTGCAGGTACAATTTAC
AACCGCTGGTGAGTCAAAGACTGAAAAAGGAAAGATTATTAAGCTTAAAAACGGTAAAAATGGGATTGGCATTACCCTGA
CAGACCACACACAGGTCATTTCTGGTGATGAGGTCGACTTTAGCACCGGAGGTGTGGGTGGACCAAGTGCAGGCTTGATG
TTTACTCTTGATATTTATGATCAAATCAATCACGAAGACTTGCGCAAGGGACGTGTGATTGCTGGTACAGGAACCATTGG
CAAGGATGGAAAAGTTGGAGATATTGGCGGGGCGGGCCTAAAGGTGGCTGCCGCCGCCGCTGCTGGTGCTGATATTTTCT
TTGTTCCAAATAATCCTGTGGATAAGGACGTCAAAAAAGCAAATCCTAAGGCTATTAGCAATTACGAGGAGGCTAAAAAA
GCAGCTAAACGACTAAAGACAGCAATGAAAATTATTCCTGTGAAAACCGTTCAAGATGCTATAAGCTACCTTAAAAAATA
G

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(131-194)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(234-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

69.767

99.422

0.694

Multiple sequence alignment