Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   DQM57_RS06235 Genome accession   NZ_LS483369
Coordinates   1197371..1200598 (-) Length   1075 a.a.
NCBI ID   WP_111727294.1    Uniprot ID   A0A7T3EV26
Organism   Neisseria cinerea strain NCTC10294     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1192371..1205598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM57_RS06225 (NCTC10294_01190) mtrC 1195183..1196421 (-) 1239 WP_107997157.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -
  DQM57_RS06230 (NCTC10294_01191) - 1196672..1197307 (+) 636 WP_111727293.1 TetR family transcriptional regulator -
  DQM57_RS06235 (NCTC10294_01192) recC 1197371..1200598 (-) 3228 WP_111727294.1 exodeoxyribonuclease V subunit gamma Machinery gene
  DQM57_RS06240 (NCTC10294_01193) - 1200700..1202109 (-) 1410 WP_111727295.1 PepSY domain-containing protein -
  DQM57_RS06245 (NCTC10294_01194) ccoP 1202309..1203640 (-) 1332 WP_107960643.1 cytochrome-c oxidase, cbb3-type subunit III -
  DQM57_RS06250 (NCTC10294_01195) - 1203664..1203834 (-) 171 WP_003677880.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  DQM57_RS06255 (NCTC10294_01196) ccoO 1203839..1204450 (-) 612 WP_003677881.1 cytochrome-c oxidase, cbb3-type subunit II -

Sequence

Protein


Download         Length: 1075 a.a.        Molecular weight: 121446.09 Da        Isoelectric Point: 4.7026

>NTDB_id=1138957 DQM57_RS06235 WP_111727294.1 1197371..1200598(-) (recC) [Neisseria cinerea strain NCTC10294]
MFYLYQSNRLETLAALFAHIQKFKPLKSALQPEQIIVQSQGMRRYLNTCLARDLGVAANLAFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRLLG
LGDDEIWQSKLWRYLDDGRQSALHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
HWGNVIEAAKILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEETPVFEEGSRDTLLHALQTDIQNLDMPSEKAG
NINTDDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKI
SRRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQAV
ERMILGWMLPEGDNPMWQDVSAWYADVNQTAMFGRFTAFIESLTDIVRIWRQPATVDEWVGRCRDLLKTLFQAEADDQNA
VQNLENEWVKWQEESTLAGFFGQLPQQTVIRHILRFLDSESEAGFLRSGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT
KAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMTGIGSRQLAEN
WIEQHPLQPFSHRYFQTGSRSNGIFSTRTDYAEALECPSGQSQPFFDNPVESCEPVAEIGQEAFVRFWRNPVKAWLQQQL
SWSEPYIDEAWEPAEPFEPQHAEQIAEIYIEARREGQDFSQTAARIGAESLLPSGELGRLWQQDFQTAAKQIDTAVLNSP
KLPPLSYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRVAFLLEHLIFCAVMPSEAETLQTFIVRSGETEVLAGIVQ
DRALQLLSEWIAFFNIGQNRPLPFFAKTSLAAAETLAEKTDWEAALKKAQTVYYGSKVSKGQKDYTEVALVFGGGEEPLE
QPLFENLVRLLADTLAAAEKREEAGAGRGRSSITG

Nucleotide


Download         Length: 3228 bp        

>NTDB_id=1138957 DQM57_RS06235 WP_111727294.1 1197371..1200598(-) (recC) [Neisseria cinerea strain NCTC10294]
ATGTTTTATTTGTATCAATCCAACCGTCTTGAAACGCTGGCGGCACTGTTTGCCCACATTCAAAAATTCAAACCGCTGAA
ATCGGCTTTACAACCCGAACAGATTATTGTGCAGAGCCAGGGGATGCGCCGCTACCTCAACACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGGCGTTCAGCCTGCCCGCCGGCCTGACGTGGAAGTTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCCCCAGAAGTCATGCGCTGGCGGCTGCTTGATTTATTCCGCAGTGAAGCATTCCGGAATAC
GGCAGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTGGGCAGCGGCGAATCGGCAGATTATCAGCTTGCGGGTC
AGCTTGCAGACATATTCGACCAATACCTCGTGTATCGTCCCCAGTGGATAGACGCTTGGCAGCAGGGCAGGCTGCTCGGT
TTGGGCGACGATGAAATCTGGCAGTCCAAACTGTGGCGTTACCTCGACGACGGCAGGCAGAGCGCGCTGCACCGTGTTGC
TTTGTGGGAAAAGCTGTTGGAATCTTTGAGCAGTGATAAGCTGCCCGAGCGTTATTTCGTTTTCGGCATTTCCACTATGG
CGCCGATGTATCTGCAGCTTTTGCACAAGCTGTCCGAACATTGCGATGTGTTCGTGTTCGCACTCAATCCGAGCGGGATG
CATTGGGGTAATGTCATTGAAGCGGCGAAAATCCTCAAAGGCGGCGGCGATCCCGATTTAACTCAGGCAGGGCATCCGCT
GCTCGCCTCATTGGGCAAGCAGGGGCGGGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGAAACGCCGGTGTTTG
AAGAAGGCAGCCGCGATACGCTTTTGCACGCCCTGCAAACCGATATCCAAAACTTGGATATGCCGTCTGAAAAAGCGGGA
AATATTAATACGGACGACGGATCGATACGTATCGTCTCCGCACACAGCCCTTTGCGCGAATTGCAGATACTCAAAGACAA
ACTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCACGATATAGCCGTATTAACCCCGAATATCGAATCCTATA
CGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAGCCCGGTGCGCAGGCATTGCCGTATTCCGTTTCGGACGTGAAAATC
AGCCGCCGACAACCGCTGTTTCATGCTTTGTCATGCCTGTTCGACTTGTTGGAAAGCCGATTTGAAGTCGATAAAGTGCT
TGTGCTTTTAGAAACCGCGCCCGTGTTGCGCCGTTTCGGACTGACTGAGGACGATTTGCCGCTTTTGCACGACATGGTTG
CCGATTTGAACGTCCGCTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTATTCACCTGGAAGCAGGCGGTA
GAACGCATGATATTGGGCTGGATGCTGCCCGAAGGCGACAATCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGACGT
GAATCAAACCGCCATGTTCGGACGTTTTACCGCCTTTATCGAGTCCCTGACGGATATTGTACGGATATGGCGGCAACCTG
CGACGGTTGATGAATGGGTAGGACGTTGCCGAGATTTGCTTAAAACATTGTTCCAAGCCGAAGCCGATGACCAAAATGCA
GTCCAAAATCTCGAAAACGAATGGGTCAAATGGCAGGAAGAGAGCACTTTGGCTGGGTTCTTCGGACAGTTGCCGCAACA
AACCGTCATCCGCCACATCCTCCGCTTCCTCGACAGCGAAAGCGAGGCGGGCTTTTTACGCAGCGGCATCACTTTTTGCA
GTATGGTACCGATGCGCAGCCTACCCTTTAAAGTCATCTGTCTGTTGGGTTTGAACGACGGAGATTTTCCCCGCAATACC
AAAGCCGCCGTATTCGACCTAATTGCCAAACATCCCGCCAAAGGCGACCGAGCCCGCCGCGATGATGACCGCTACCTGTT
CCTCGAAGCCCTCATCAGCGCGCGTGAAATCCTCTACCTGTCCTACATCGGGCGAGACATCCGCAAAGACGAAGAACTGG
CTCCGTCTTCCCTGTTGGGCGAACTCATCGATACTGTTGCCGCTATGACCGGAATCGGCAGCCGGCAACTTGCAGAAAAC
TGGATAGAACAGCATCCGCTGCAACCCTTCTCACATCGCTATTTCCAGACCGGTTCCCGCTCAAACGGCATATTCAGTAC
ACGTACCGACTACGCCGAAGCACTCGAATGCCCCTCAGGGCAGTCTCAACCCTTTTTCGACAACCCCGTCGAAAGCTGCG
AACCCGTTGCCGAAATCGGACAGGAGGCATTTGTCCGGTTTTGGCGTAATCCCGTCAAAGCATGGCTTCAGCAGCAGCTT
TCATGGAGCGAACCCTATATCGACGAAGCATGGGAACCGGCCGAACCCTTCGAGCCGCAACATGCCGAGCAAATCGCCGA
AATCTATATCGAGGCGCGCCGCGAAGGACAAGATTTTTCCCAAACCGCCGCCCGCATCGGGGCGGAAAGCCTGCTGCCGT
CGGGAGAGTTGGGCAGACTTTGGCAGCAGGACTTCCAAACCGCTGCCAAACAAATCGACACGGCGGTTTTAAACAGCCCC
AAACTGCCACCGCTTTCATACGCCATACCGTCGGACGGACAAATCCTGAAAGGCAGCTTGGGCAATCTGTACCGCTGCGG
TCAGGTGTTTTACGCCTACGGCAAACCCAACGCGCCACAACGTGTGGCTTTTTTGTTGGAACACCTAATATTTTGCGCCG
TCATGCCGTCTGAAGCCGAAACGCTGCAAACCTTTATCGTCAGATCCGGAGAAACAGAAGTATTGGCGGGAATCGTGCAA
GACAGGGCATTGCAGCTATTGTCGGAATGGATTGCATTTTTTAATATCGGACAAAACCGCCCGCTGCCGTTTTTTGCCAA
GACCTCGCTTGCCGCCGCCGAAACATTGGCCGAAAAAACGGATTGGGAAGCGGCACTGAAAAAAGCCCAAACCGTCTATT
ACGGTAGCAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTTGCCCTCGTTTTCGGCGGAGGGGAAGAACCACTCGAA
CAGCCCCTGTTTGAAAACCTTGTCCGCCTGCTTGCCGACACGCTTGCTGCAGCGGAAAAAAGGGAAGAGGCCGGAGCGGG
AAGAGGCCGGAGCAGCATAACAGGATAG

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(778-996)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3EV26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

89.991

99.442

0.895

Multiple sequence alignment