Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DQM56_RS10340 Genome accession   NZ_LS483368
Coordinates   48724..48822 (+) Length   32 a.a.
NCBI ID   WP_021320241.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 43724..53822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS00260 (NCTC6176_00052) purE 43890..44378 (+) 489 WP_111710069.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  DQM56_RS00265 (NCTC6176_00053) purK 44365..45456 (+) 1092 WP_111710072.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  DQM56_RS00270 (NCTC6176_00054) - 45466..45690 (+) 225 WP_037582407.1 hypothetical protein -
  DQM56_RS10095 - 45715..45786 (+) 72 Protein_34 hypothetical protein -
  DQM56_RS00280 (NCTC6176_00055) purB 46136..47428 (+) 1293 WP_111710074.1 adenylosuccinate lyase -
  DQM56_RS00285 (NCTC6176_00056) comR 47727..48641 (+) 915 WP_042669756.1 helix-turn-helix domain-containing protein Regulator
  DQM56_RS10340 (NCTC6176_00057) comS 48724..48822 (+) 99 WP_021320241.1 quorum-sensing system DWW-type pheromone Regulator
  DQM56_RS00290 (NCTC6176_00058) ruvB 48856..49857 (+) 1002 WP_042669757.1 Holliday junction branch migration DNA helicase RuvB -
  DQM56_RS00295 (NCTC6176_00059) - 50143..50601 (+) 459 WP_012514717.1 low molecular weight protein-tyrosine-phosphatase -
  DQM56_RS00300 (NCTC6176_00060) - 50607..51008 (+) 402 WP_111710076.1 hypothetical protein -
  DQM56_RS00305 (NCTC6176_00061) - 51005..52786 (+) 1782 WP_111710078.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3937.66 Da        Isoelectric Point: 8.5430

>NTDB_id=1138930 DQM56_RS10340 WP_021320241.1 48724..48822(+) (comS) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MFKKYQYYLFLAALFLLHSAQLLSDIDWWRVG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=1138930 DQM56_RS10340 WP_021320241.1 48724..48822(+) (comS) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGTTTAAAAAATACCAATACTATCTGTTTTTAGCTGCTTTATTTCTACTTCATTCTGCCCAATTACTTAGTGATATTGA
CTGGTGGCGTGTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

51.613

96.875

0.5
  comS Streptococcus pyogenes MGAS315

37.5

100

0.375

Multiple sequence alignment