Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQM56_RS02485 Genome accession   NZ_LS483368
Coordinates   494335..495060 (+) Length   241 a.a.
NCBI ID   WP_012678429.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 489335..500060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS02455 (NCTC6176_00492) tsaE 489750..490193 (+) 444 WP_111710370.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQM56_RS02460 (NCTC6176_00493) - 490186..490713 (+) 528 WP_111710372.1 GNAT family N-acetyltransferase -
  DQM56_RS02465 (NCTC6176_00494) brpA 490714..491976 (+) 1263 WP_111689880.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQM56_RS02470 (NCTC6176_00495) - 492146..492442 (-) 297 WP_012679094.1 hypothetical protein -
  DQM56_RS02475 (NCTC6176_00496) - 492439..492858 (-) 420 WP_111689882.1 HIT family protein -
  DQM56_RS02480 (NCTC6176_00497) - 493310..493798 (-) 489 WP_111710374.1 hypothetical protein -
  DQM56_RS02485 (NCTC6176_00499) pptA 494335..495060 (+) 726 WP_012678429.1 ABC transporter ATP-binding protein Regulator
  DQM56_RS02490 (NCTC6176_00500) - 495064..496098 (+) 1035 WP_012678428.1 ABC transporter permease -
  DQM56_RS02495 (NCTC6176_00501) ccrZ 496161..496952 (+) 792 WP_012515084.1 cell cycle regulator CcrZ -
  DQM56_RS02500 (NCTC6176_00502) trmB 496952..497587 (+) 636 WP_043025300.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQM56_RS02515 (NCTC6176_00504) rimP 498932..499414 (+) 483 WP_042670147.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26506.80 Da        Isoelectric Point: 4.8615

>NTDB_id=1138886 DQM56_RS02485 WP_012678429.1 494335..495060(+) (pptA) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MLNIENVTGGYLNIPVLKDISFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYKGRISIDGLTLAEHEADYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAHKRAEPFLELFRLTDKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAIADLIKALEVEKAKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGTLADLQAVFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1138886 DQM56_RS02485 WP_012678429.1 494335..495060(+) (pptA) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATGTTAAACATTGAGAATGTCACTGGAGGCTACCTTAATATTCCAGTTTTGAAGGATATTAGCTTTTCTGTCGGAAATGG
AGAGCTAGTAGGGCTTATTGGTCTAAATGGTGCTGGTAAGTCAACAACGATTAATGAAATTATTGGGTTTTTAAAGCCTT
ATAAGGGAAGGATTTCCATTGATGGCTTAACCTTGGCGGAGCATGAAGCTGATTATCGCAAGAAAATTGGCTTTATCCCA
GAAACACCAAGCTTATATGAGGAGCTGACCTTAGCAGAGCATATCAATACGGTAGCTATGGCCTATGATATTGATGTGGA
GCTGGCACATAAGCGAGCTGAGCCCTTCTTAGAGCTGTTTCGCTTGACGGATAAGTTGGATTGGTTTCCGGTGCATTTTT
CTAAGGGAATGAAGCAAAAGGTTATGATTATTTGCGCTTTTGTCATTGACCCTAGTCTTTTTATTCTTGATGAGCCCTTT
TTGGGGCTTGACCCCTTAGCAATTGCTGATTTGATTAAGGCTTTAGAGGTTGAAAAGGCAAAGGGCAAGTCAATTCTAAT
GAGTACCCATGTGCTGGATTCGGCAGAAAAAATGTGTGACCGCTTTGTGATATTGCATCAGGGGCAGGTGCGTGCGCAAG
GGACTCTGGCGGATTTGCAGGCAGTCTTTGGAGATGCTTCAGCTAGTCTTAATGACATTTACTTAGCGCTGACAAAAGAG
GGGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.477

99.17

0.739
  pptA Streptococcus thermophilus LMD-9

73.64

99.17

0.73

Multiple sequence alignment