Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQM56_RS01250 Genome accession   NZ_LS483368
Coordinates   237866..239227 (+) Length   453 a.a.
NCBI ID   WP_111710181.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC6176     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 232866..244227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM56_RS01235 (NCTC6176_00249) - 234441..236237 (+) 1797 WP_111710177.1 ABC transporter ATP-binding protein -
  DQM56_RS01240 (NCTC6176_00250) - 236388..237155 (+) 768 WP_111710179.1 epoxyqueuosine reductase QueH -
  DQM56_RS01245 (NCTC6176_00251) - 237354..237800 (+) 447 WP_037580461.1 dUTP diphosphatase -
  DQM56_RS01250 (NCTC6176_00252) radA 237866..239227 (+) 1362 WP_111710181.1 DNA repair protein RadA Machinery gene
  DQM56_RS01260 (NCTC6176_00253) - 240049..240555 (+) 507 WP_014622237.1 beta-class carbonic anhydrase -
  DQM56_RS01265 (NCTC6176_00254) - 240683..241396 (+) 714 WP_037580456.1 TIGR00266 family protein -
  DQM56_RS01270 (NCTC6176_00255) gltX 242158..243603 (+) 1446 WP_111710183.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49333.77 Da        Isoelectric Point: 6.7543

>NTDB_id=1138881 DQM56_RS01250 WP_111710181.1 237866..239227(+) (radA) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEETEVKDVKNARISLTGEKSKPIKLKHINGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGDIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDIPSGIEVVGVMTVGEVLKAVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1138881 DQM56_RS01250 WP_111710181.1 237866..239227(+) (radA) [Streptococcus equi subsp. zooepidemicus strain NCTC6176]
ATAGCTAAGAAAAAGGCGAGGTTTATCTGTGGGGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGCTGCCCTAATTG
CTCTGCTTGGTCTTCCTTTGTAGAGGAGACAGAGGTCAAGGACGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATATCAATGGCGTTCGCTACCAGCGTATCCAGACAGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGTGGTGTTGTGCCGGGGAGCTTGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACGCTGCTCTTGCA
GGTTTCTATCCAGCTTGCGGATAAGGGAACTGTTTTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGATCGTTTGGGACAGACCGACAATGATTTTTACCTCTATGCGGAGACCAATATGCAGGCTATTCGGGCAGAGATTGAA
GCCATTCAGCCGGATTTTTTGATTATTGATTCTATTCAGACGATCATGAGTCCGGAGATTTCGGGTGTTCAGGGTTCGGT
CAGTCAGGTTCGAGAGGTCACTGCCGAATTGCTGCAGCTTGCAAAGTCTAATCATATCGCTACCTTTATCGTGGGCCATG
TGACCAAGGAGGGGACCCTAGCAGGGCCCCGCATGCTGGAGCATATGGTTGATACTGTGCTTTATTTTGAAGGGGAAAGA
CACCATACCTTTCGAATCCTGCGAGCTGTTAAAAATCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGCTTAGTGGAGGTTCTCAACCCCAGTCAGGTTTTCTTAGAGGAGCGTCTGGACGGCGCAACAGGTTCTGCTGTAG
TTGTTACCATGGAGGGGAGCAGACCGATTTTAGCTGAGGTGCAGGCACTGGTGACACCGACTGTTTTTGGCAATGCTAGA
CGAACGACAACTGGGTTGGACTTTAATCGCGTCAGTCTGATTATGGCTGTCTTGGAAAAGCGATGTGGGCTGCTGCTACA
AAATCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTGAAGCTAGATGAGCCTGCTATTGACTTGGCAGTTGCTGTGGCCA
TTGCCTCTAGCTACAAGGAAAAACCAACCAACCCTCAGGAGGCCTTTTTAGGAGAGATTGGCTTGACTGGTGATATTCGG
CGTGTGACCCGTATTGAGCAGCGGATTAATGAAGCCGCTAAGCTTGGCTTTACCAAGCTTTACGCTCCGAAAAGCTCATT
GCAGGGCATTGACATACCAAGTGGGATTGAGGTTGTTGGTGTAATGACAGTAGGAGAGGTCTTAAAGGCAGTCTTTGCTT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

83.885

100

0.839
  radA Streptococcus pneumoniae D39

83.885

100

0.839
  radA Streptococcus pneumoniae R6

83.885

100

0.839
  radA Streptococcus pneumoniae TIGR4

83.885

100

0.839
  radA Streptococcus mitis SK321

83.885

100

0.839
  radA Streptococcus mitis NCTC 12261

83.664

100

0.837
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611

Multiple sequence alignment