Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM52_RS10095 Genome accession   NZ_LS483367
Coordinates   2005976..2006689 (+) Length   237 a.a.
NCBI ID   WP_002982243.1    Uniprot ID   A0A9X5LXW4
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2000976..2011689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM52_RS10085 (NCTC5371_02052) treC 2002046..2003674 (-) 1629 WP_002991331.1 alpha,alpha-phosphotrehalase -
  DQM52_RS10090 (NCTC5371_02053) treP 2003741..2005765 (-) 2025 WP_003059974.1 PTS system trehalose-specific EIIBC component -
  DQM52_RS10095 (NCTC5371_02054) treR 2005976..2006689 (+) 714 WP_002982243.1 trehalose operon repressor Regulator
  DQM52_RS10105 (NCTC5371_02055) - 2006968..2007234 (-) 267 WP_111681925.1 winged helix-turn-helix transcriptional regulator -
  DQM52_RS10110 (NCTC5371_02056) - 2007493..2008350 (+) 858 WP_111681926.1 VOC family protein -
  DQM52_RS10115 (NCTC5371_02057) yaaA 2008392..2009123 (+) 732 WP_111681927.1 peroxide stress protein YaaA -
  DQM52_RS10120 (NCTC5371_02058) nrdG 2009297..2009911 (-) 615 WP_003058750.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQM52_RS10125 (NCTC5371_02059) - 2009915..2010418 (-) 504 WP_003058815.1 GNAT family N-acetyltransferase -
  DQM52_RS10130 (NCTC5371_02060) - 2010427..2011362 (-) 936 WP_012767638.1 Gfo/Idh/MocA family oxidoreductase -
  DQM52_RS10715 (NCTC5371_02061) - 2011391..2011537 (-) 147 WP_003053094.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27592.78 Da        Isoelectric Point: 9.6226

>NTDB_id=1138867 DQM52_RS10095 WP_002982243.1 2005976..2006689(+) (treR) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1138867 DQM52_RS10095 WP_002982243.1 2005976..2006689(+) (treR) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAGTACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCGCTTCTCACTAAGGCAG
GCCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAGCATCATCAGATCATGTTCCCCATCTCAGAACTAACT
AGCTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTCGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679

Multiple sequence alignment