Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQM52_RS08710 Genome accession   NZ_LS483367
Coordinates   1711948..1712673 (-) Length   241 a.a.
NCBI ID   WP_003057032.1    Uniprot ID   A0A9X5LWD8
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1706948..1717673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM52_RS08680 (NCTC5371_01774) nusA 1707142..1708299 (-) 1158 WP_003057051.1 transcription termination factor NusA -
  DQM52_RS08685 (NCTC5371_01775) rimP 1708442..1708936 (-) 495 WP_044022604.1 ribosome maturation factor RimP -
  DQM52_RS08695 (NCTC5371_01777) trmB 1709420..1710055 (-) 636 WP_111681875.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQM52_RS08700 (NCTC5371_01778) - 1710055..1710846 (-) 792 WP_003052472.1 phosphotransferase family protein -
  DQM52_RS08705 (NCTC5371_01779) - 1710911..1711945 (-) 1035 WP_111681876.1 ABC transporter permease -
  DQM52_RS08710 (NCTC5371_01780) pptA 1711948..1712673 (-) 726 WP_003057032.1 ABC transporter ATP-binding protein Regulator
  DQM52_RS08715 (NCTC5371_01781) - 1712745..1713164 (+) 420 WP_111681877.1 HIT family protein -
  DQM52_RS08720 (NCTC5371_01782) - 1713161..1713490 (+) 330 WP_003057072.1 hypothetical protein -
  DQM52_RS08725 (NCTC5371_01783) - 1713648..1714916 (-) 1269 WP_015058007.1 LCP family protein -
  DQM52_RS08730 (NCTC5371_01784) - 1714928..1715449 (-) 522 WP_003057063.1 GNAT family N-acetyltransferase -
  DQM52_RS08735 (NCTC5371_01785) tsaE 1715442..1715885 (-) 444 WP_065361353.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQM52_RS08740 (NCTC5371_01786) - 1716062..1717522 (-) 1461 WP_003057030.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26416.65 Da        Isoelectric Point: 4.6450

>NTDB_id=1138859 DQM52_RS08710 WP_003057032.1 1711948..1712673(-) (pptA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371]
MLNIENLTGGYLNIPVLKEVSFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYQGEISIDGLTLTADPAAYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAQKRAEPFLKMFRLADKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLELEKGKGKSILMSTHVLDSAEKMCDRFVILHHGQVRAQGTLADLQDAFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1138859 DQM52_RS08710 WP_003057032.1 1711948..1712673(-) (pptA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5371]
ATGTTAAACATTGAAAATCTAACGGGGGGTTACCTCAATATTCCCGTTTTAAAAGAGGTCTCATTTTCTGTTGGCAATGG
TGAATTAGTTGGGTTGATAGGCTTAAATGGAGCTGGAAAATCAACAACTATCAATGAAATTATTGGTTTTTTAAAACCTT
ATCAGGGAGAAATTTCGATTGATGGACTAACCTTGACTGCAGATCCAGCTGCCTATCGTAAGAAAATTGGATTTATCCCA
GAGACACCTAGCCTCTATGAAGAATTAACTTTGGCAGAGCATATTAATACTGTGGCTATGGCCTATGATATTGATGTGGA
ATTGGCACAAAAACGAGCAGAACCGTTTTTAAAGATGTTCCGCTTAGCTGATAAATTAGATTGGTTTCCTGTTCATTTTT
CAAAAGGCATGAAGCAAAAAGTCATGATTATCTGTGCTTTTGTGATTGATCCAAGTCTGTTTATCCTTGACGAGCCATTT
TTAGGATTAGACCCGTTGGCTATCTCAGACTTGATTCAGACTTTGGAGCTTGAAAAAGGCAAAGGCAAATCGATTTTAAT
GAGTACTCATGTGCTTGACTCTGCTGAGAAAATGTGTGATCGTTTTGTCATTCTGCATCATGGTCAAGTACGGGCTCAGG
GAACGCTTGCTGACTTGCAGGATGCCTTTGGTGATGCTTCTGCTAGCCTTAACGATATTTACCTGGCATTGACAAAAGAG
GGCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

99.17

0.747
  pptA Streptococcus thermophilus LMD-9

74.477

99.17

0.739

Multiple sequence alignment