Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM60_RS09695 Genome accession   NZ_LS483366
Coordinates   2074293..2075003 (+) Length   236 a.a.
NCBI ID   WP_096833151.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC7366     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2069293..2080003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM60_RS09685 (NCTC7366_01962) treC 2070477..2072102 (-) 1626 WP_002887038.1 alpha,alpha-phosphotrehalase -
  DQM60_RS09690 (NCTC7366_01963) treP 2072157..2074136 (-) 1980 WP_049527746.1 PTS system trehalose-specific EIIBC component -
  DQM60_RS09695 (NCTC7366_01964) treR 2074293..2075003 (+) 711 WP_096833151.1 trehalose operon repressor Regulator
  DQM60_RS09700 (NCTC7366_01965) - 2075057..2075617 (-) 561 WP_049527743.1 TIGR01440 family protein -
  DQM60_RS09705 (NCTC7366_01966) - 2075633..2075971 (-) 339 WP_014635137.1 hypothetical protein -
  DQM60_RS09710 (NCTC7366_01967) - 2076004..2076360 (-) 357 WP_049527740.1 hypothetical protein -
  DQM60_RS09715 (NCTC7366_01968) - 2076526..2077407 (-) 882 WP_002887043.1 class II fructose-bisphosphate aldolase -
  DQM60_RS09725 (NCTC7366_01970) - 2077830..2079125 (-) 1296 WP_002887045.1 hypothetical protein -
  DQM60_RS09730 (NCTC7366_01972) rplQ 2079376..2079762 (-) 387 WP_002885709.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27382.08 Da        Isoelectric Point: 6.8431

>NTDB_id=1138808 DQM60_RS09695 WP_096833151.1 2074293..2075003(+) (treR) [Streptococcus salivarius strain NCTC7366]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQLNLIISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1138808 DQM60_RS09695 WP_096833151.1 2074293..2075003(+) (treR) [Streptococcus salivarius strain NCTC7366]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTTCTCCC
CACCGAACAAGAACTGGTTCAATCTTACCAGGTTAGTAGAGATACTATTCGAAAGGCATTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAAATTCATGGCTCTGGCTCCCAGGTTATTAACCAAGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAGGAGCTAATCGAACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATTGTTGATTC
AAAACTCTCGGAAAGAACTGGATTTTCTAACAGCCGACAGGTTTGGCGTGTTGTTCGTCAAAGAGTCGTTGATAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGATGCCAGCCTTGTTCCGCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAACTCAACCTTATCATTTCTCATGCATTTAAAGAAATCACTATCGATAACGCTACCGATCAAGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTTGTCTGTGTCCGTTCAAAAGTTTATTTAAACAACGGAAAACAGT
TCCAATTTACGGAAAGTCGCCATAAACTTGAAAAATTCAAATTTGTTGATTATGCCAAGCGCCATCATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(88-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.851

99.576

0.606

Multiple sequence alignment