Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   DQM60_RS08475 Genome accession   NZ_LS483366
Coordinates   1822087..1823163 (-) Length   358 a.a.
NCBI ID   WP_002884703.1    Uniprot ID   A0A1W5ZBL0
Organism   Streptococcus salivarius strain NCTC7366     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1817087..1828163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM60_RS08450 (NCTC7366_01707) - 1817234..1818016 (+) 783 WP_014632681.1 ABC transporter ATP-binding protein -
  DQM60_RS08455 (NCTC7366_01708) - 1818200..1820266 (-) 2067 WP_049529032.1 cation:proton antiporter -
  DQM60_RS08460 (NCTC7366_01709) - 1820275..1820517 (-) 243 WP_002891697.1 hypothetical protein -
  DQM60_RS08465 (NCTC7366_01710) - 1820514..1821062 (-) 549 WP_049529030.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  DQM60_RS08470 (NCTC7366_01711) - 1821059..1822003 (-) 945 WP_014632678.1 TIGR01212 family radical SAM protein -
  DQM60_RS08475 (NCTC7366_01712) sepM 1822087..1823163 (-) 1077 WP_002884703.1 SepM family pheromone-processing serine protease Regulator
  DQM60_RS08480 (NCTC7366_01713) coaD 1823141..1823638 (-) 498 WP_014632676.1 pantetheine-phosphate adenylyltransferase -
  DQM60_RS08485 (NCTC7366_01714) rsmD 1823671..1824219 (-) 549 WP_231910681.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DQM60_RS08490 (NCTC7366_01715) trxB 1824359..1825279 (-) 921 WP_014632674.1 thioredoxin-disulfide reductase -
  DQM60_RS08495 (NCTC7366_01716) - 1825345..1825569 (-) 225 WP_002884393.1 DUF4059 family protein -
  DQM60_RS08500 (NCTC7366_01717) - 1825781..1826524 (-) 744 WP_014632672.1 amino acid ABC transporter ATP-binding protein -
  DQM60_RS08505 (NCTC7366_01718) - 1826524..1827270 (-) 747 WP_096832659.1 amino acid ABC transporter permease -

Sequence


Protein


Download         Length: 358 a.a.        Molecular weight: 38988.67 Da        Isoelectric Point: 9.2472

>NTDB_id=1138795 DQM60_RS08475 WP_002884703.1 1822087..1823163(-) (sepM) [Streptococcus salivarius strain NCTC7366]
MANKNESKSLLGKIWRIKWWLLSIFTVLFLLFALFFPLNNYYVELPGGAFDTKEVLTVDKKADDSKGSYNFVAVAQTKAT
LALMLYAQLNDFAKLQTAEEATGNYSDEDFMRINQFYMETSQNQAIYQGLTLAGKEASLEYMGVYVLQVADDSSFKGVLN
IADTVTAVNGKTFDNSADLIKYVQGLKLGSKVKVTYTTDDKEKTATGKIIKIANGKNGIGIGLTDHTEVKSPENVKFKLD
GVGGPSAGLMFTLAIYDQVSGQDLKAGRKIAGTGTIEKDGSVGDIGGAYLKVKSAADSGADIFFVPNNPVTKEMKKADPD
AKTNYQEAKEAAKKLGTKMKIVPVKTAQEAIDYLKKTK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=1138795 DQM60_RS08475 WP_002884703.1 1822087..1823163(-) (sepM) [Streptococcus salivarius strain NCTC7366]
GTGGCAAACAAGAACGAATCTAAATCACTATTAGGGAAAATTTGGCGGATTAAGTGGTGGTTGTTAAGTATTTTTACGGT
ACTTTTCCTCCTATTTGCCCTCTTTTTCCCGCTAAATAATTATTATGTTGAGCTTCCGGGTGGTGCTTTTGATACTAAGG
AAGTCTTGACTGTAGACAAGAAAGCTGATGATTCAAAAGGATCCTACAATTTTGTGGCAGTGGCCCAAACCAAGGCGACT
TTAGCCTTGATGCTCTATGCTCAGCTTAATGATTTTGCAAAGCTTCAAACAGCTGAAGAGGCAACTGGGAATTACTCTGA
TGAAGATTTCATGCGTATCAACCAATTTTACATGGAGACTTCCCAAAACCAAGCGATTTATCAGGGCTTGACTCTGGCCG
GTAAGGAGGCTAGCTTGGAGTATATGGGTGTCTATGTGCTTCAGGTGGCTGATGATTCTAGCTTCAAGGGTGTCCTCAAT
ATTGCGGATACGGTGACAGCTGTCAATGGCAAGACCTTTGATAATTCTGCTGACTTGATTAAATACGTTCAAGGACTTAA
GCTGGGTTCAAAAGTCAAGGTCACTTATACGACAGATGACAAAGAAAAGACTGCCACTGGTAAGATTATCAAGATTGCCA
ATGGTAAAAATGGTATTGGTATCGGTTTGACAGATCATACCGAGGTTAAGAGTCCTGAAAATGTGAAGTTTAAACTTGAT
GGCGTTGGCGGACCAAGTGCGGGTCTTATGTTTACCCTAGCTATTTACGATCAGGTATCTGGTCAAGACCTCAAGGCTGG
CCGTAAGATTGCTGGAACAGGAACCATTGAAAAGGATGGTTCGGTCGGTGATATCGGTGGTGCCTACCTCAAGGTGAAAT
CAGCGGCTGATAGTGGTGCAGACATTTTCTTCGTGCCAAATAATCCAGTAACCAAGGAAATGAAAAAGGCTGATCCGGAT
GCCAAAACCAACTATCAAGAGGCCAAGGAAGCTGCCAAGAAACTGGGAACCAAGATGAAAATCGTCCCTGTTAAAACAGC
TCAAGAAGCCATTGATTATTTGAAAAAGACTAAATAA

Domains


Predicted by InterproScan.

(142-206)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1W5ZBL0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

65.396

95.251

0.623


Multiple sequence alignment