Detailed information
Bioinformatically predicted
Overview
| Name | amiE | Type | Regulator |
| Locus tag | DQM60_RS02780 | Genome accession | NZ_LS483366 |
| Coordinates | 539917..541002 (+) | Length | 361 a.a. |
| NCBI ID | WP_037601740.1 | Uniprot ID | A0A074IQF0 |
| Organism | Streptococcus salivarius strain NCTC7366 | ||
| Function | internalize XIP (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 472534..553265 | 539917..541002 | within | 0 |
Gene organization within MGE regions
Location: 472534..553265
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM60_RS02455 (NCTC7366_00497) | - | 474962..475891 (+) | 930 | WP_014632774.1 | group I intron-associated PD-(D/E)XK endonuclease | - |
| DQM60_RS02460 (NCTC7366_00498) | - | 475909..477141 (+) | 1233 | WP_111686484.1 | DNA cytosine methyltransferase | - |
| DQM60_RS02465 (NCTC7366_00499) | - | 477307..478887 (+) | 1581 | WP_014632776.1 | hypothetical protein | - |
| DQM60_RS02470 (NCTC7366_00500) | - | 479771..480145 (+) | 375 | WP_002884266.1 | CidA/LrgA family protein | - |
| DQM60_RS02475 (NCTC7366_00501) | - | 480138..480833 (+) | 696 | WP_002884772.1 | LrgB family protein | - |
| DQM60_RS02480 (NCTC7366_00502) | - | 480919..481479 (+) | 561 | WP_111686485.1 | HAD-IA family hydrolase | - |
| DQM60_RS02485 (NCTC7366_00503) | gyrB | 481480..483432 (+) | 1953 | WP_014632780.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| DQM60_RS02490 (NCTC7366_00504) | ezrA | 483529..485253 (+) | 1725 | WP_111686486.1 | septation ring formation regulator EzrA | - |
| DQM60_RS02495 (NCTC7366_00505) | serB | 485365..486012 (+) | 648 | WP_111686487.1 | phosphoserine phosphatase SerB | - |
| DQM60_RS02500 (NCTC7366_00506) | - | 486238..486477 (+) | 240 | WP_014634861.1 | hypothetical protein | - |
| DQM60_RS02505 (NCTC7366_00507) | - | 486515..487405 (-) | 891 | WP_111686488.1 | DMT family transporter | - |
| DQM60_RS02510 (NCTC7366_00508) | - | 487520..487885 (-) | 366 | WP_073686925.1 | histidine kinase | - |
| DQM60_RS02515 (NCTC7366_00509) | - | 488018..488953 (+) | 936 | WP_004182385.1 | IS30 family transposase | - |
| DQM60_RS02520 (NCTC7366_00510) | - | 489194..489559 (+) | 366 | WP_045768493.1 | OsmC family protein | - |
| DQM60_RS02525 (NCTC7366_00511) | - | 489653..490036 (+) | 384 | WP_021143776.1 | PaaI family thioesterase | - |
| DQM60_RS02530 (NCTC7366_00512) | - | 490050..491024 (+) | 975 | WP_070847571.1 | GyrI-like domain-containing protein | - |
| DQM60_RS02535 (NCTC7366_00513) | - | 491025..491756 (+) | 732 | WP_070847573.1 | pseudouridine synthase | - |
| DQM60_RS02540 (NCTC7366_00514) | - | 491838..491966 (+) | 129 | WP_002884629.1 | DUF4044 domain-containing protein | - |
| DQM60_RS02545 (NCTC7366_00515) | obgE | 492061..493374 (+) | 1314 | WP_002884694.1 | GTPase ObgE | - |
| DQM60_RS02550 (NCTC7366_00516) | - | 493502..493699 (+) | 198 | WP_002884415.1 | hypothetical protein | - |
| DQM60_RS02555 (NCTC7366_00517) | - | 493773..494513 (-) | 741 | WP_002886797.1 | amino acid ABC transporter ATP-binding protein | - |
| DQM60_RS02560 (NCTC7366_00518) | - | 494513..496711 (-) | 2199 | WP_002886798.1 | ABC transporter substrate-binding protein/permease | - |
| DQM60_RS02565 (NCTC7366_00519) | - | 496910..497845 (+) | 936 | WP_073686927.1 | CPBP family intramembrane glutamic endopeptidase | - |
| DQM60_RS02570 (NCTC7366_00520) | - | 497916..498536 (+) | 621 | WP_073686928.1 | hypothetical protein | - |
| DQM60_RS02575 (NCTC7366_00521) | uvrB | 498526..500517 (+) | 1992 | WP_002886801.1 | excinuclease ABC subunit UvrB | - |
| DQM60_RS02585 (NCTC7366_00522) | - | 500821..501285 (+) | 465 | WP_002886803.1 | 8-oxo-dGTP diphosphatase | - |
| DQM60_RS02590 (NCTC7366_00523) | - | 501501..502313 (+) | 813 | WP_002886804.1 | transporter substrate-binding domain-containing protein | - |
| DQM60_RS02595 (NCTC7366_00524) | - | 502325..503122 (+) | 798 | WP_002884336.1 | transporter substrate-binding domain-containing protein | - |
| DQM60_RS02600 (NCTC7366_00525) | - | 503367..504476 (+) | 1110 | WP_002886805.1 | aminotransferase | - |
| DQM60_RS02605 (NCTC7366_00526) | - | 504538..505332 (+) | 795 | WP_002886806.1 | ABC transporter substrate-binding protein | - |
| DQM60_RS02610 (NCTC7366_00527) | rpsU | 505525..505701 (+) | 177 | WP_002884573.1 | 30S ribosomal protein S21 | - |
| DQM60_RS02615 (NCTC7366_00528) | mscL | 505850..506227 (-) | 378 | WP_002886807.1 | large conductance mechanosensitive channel protein MscL | - |
| DQM60_RS02620 (NCTC7366_00529) | dnaG | 506390..508201 (+) | 1812 | WP_002886808.1 | DNA primase | - |
| DQM60_RS02625 (NCTC7366_00530) | rpoD | 508205..509314 (+) | 1110 | WP_002884252.1 | RNA polymerase sigma factor RpoD | - |
| DQM60_RS02630 (NCTC7366_00531) | - | 509368..509703 (+) | 336 | WP_002886809.1 | metal-sulfur cluster assembly factor | - |
| DQM60_RS02635 (NCTC7366_00532) | - | 509714..510640 (+) | 927 | WP_111686489.1 | glycosyltransferase family 2 protein | - |
| DQM60_RS02640 (NCTC7366_00533) | rfbD | 510702..511553 (+) | 852 | WP_111686490.1 | dTDP-4-dehydrorhamnose reductase | - |
| DQM60_RS02645 (NCTC7366_00534) | - | 511639..512925 (+) | 1287 | WP_096832998.1 | polysaccharide biosynthesis C-terminal domain-containing protein | - |
| DQM60_RS02650 (NCTC7366_00535) | - | 512927..513907 (+) | 981 | WP_111686491.1 | glycosyltransferase family 2 protein | - |
| DQM60_RS02655 (NCTC7366_00536) | - | 513940..514908 (+) | 969 | WP_111686687.1 | glycosyltransferase family 2 protein | - |
| DQM60_RS02660 (NCTC7366_00537) | - | 514909..515625 (+) | 717 | WP_172453850.1 | glycosyltransferase family 2 protein | - |
| DQM60_RS02665 (NCTC7366_00538) | - | 515625..515981 (+) | 357 | WP_111686493.1 | DUF2304 domain-containing protein | - |
| DQM60_RS02670 (NCTC7366_00539) | - | 515971..516747 (+) | 777 | WP_111686494.1 | glycosyltransferase family 2 protein | - |
| DQM60_RS02675 (NCTC7366_00540) | cps2T | 516866..518014 (+) | 1149 | WP_111686495.1 | beta 1-4 rhamnosyltransferase Cps2T | - |
| DQM60_RS02680 (NCTC7366_00541) | - | 518011..518952 (+) | 942 | WP_111686496.1 | glycosyltransferase family 2 protein | - |
| DQM60_RS02685 (NCTC7366_00542) | - | 518952..519758 (+) | 807 | WP_111686497.1 | ABC transporter permease | - |
| DQM60_RS02690 (NCTC7366_00543) | - | 519758..520981 (+) | 1224 | WP_111686498.1 | ABC transporter ATP-binding protein | - |
| DQM60_RS02695 (NCTC7366_00544) | - | 520994..522343 (+) | 1350 | WP_111686499.1 | glycosyltransferase | - |
| DQM60_RS02700 (NCTC7366_00545) | - | 522345..524090 (+) | 1746 | WP_111686500.1 | rhamnan synthesis F family protein | - |
| DQM60_RS02705 (NCTC7366_00546) | - | 524101..525585 (+) | 1485 | WP_111686501.1 | DUF2142 domain-containing protein | - |
| DQM60_RS02710 (NCTC7366_00547) | radC | 525760..526446 (+) | 687 | WP_045768510.1 | RadC family protein | - |
| DQM60_RS02715 (NCTC7366_00548) | - | 526504..527199 (-) | 696 | WP_013990214.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| DQM60_RS02720 (NCTC7366_00549) | - | 527192..527851 (-) | 660 | WP_045768511.1 | redox-sensing transcriptional repressor Rex | - |
| DQM60_RS02725 (NCTC7366_00550) | - | 527994..528341 (-) | 348 | WP_045768512.1 | DUF1831 domain-containing protein | - |
| DQM60_RS02730 (NCTC7366_00551) | - | 528331..529455 (-) | 1125 | WP_045768513.1 | cysteine desulfurase family protein | - |
| DQM60_RS02735 (NCTC7366_00552) | - | 529459..530430 (-) | 972 | WP_013990217.1 | ribose-phosphate diphosphokinase | - |
| DQM60_RS02740 (NCTC7366_00553) | - | 530704..531279 (-) | 576 | WP_045768514.1 | CYTH domain-containing protein | - |
| DQM60_RS02745 (NCTC7366_00554) | - | 531375..532049 (+) | 675 | WP_045768515.1 | GTP pyrophosphokinase family protein | - |
| DQM60_RS02750 (NCTC7366_00555) | - | 532021..532857 (+) | 837 | WP_002884507.1 | NAD kinase | - |
| DQM60_RS02755 (NCTC7366_00556) | - | 532854..533750 (+) | 897 | WP_045772225.1 | RluA family pseudouridine synthase | - |
| DQM60_RS02760 (NCTC7366_00557) | pta | 533764..534747 (+) | 984 | WP_045772226.1 | phosphate acetyltransferase | - |
| DQM60_RS02765 (NCTC7366_00559) | - | 534984..536954 (+) | 1971 | Protein_479 | peptide ABC transporter substrate-binding protein | - |
| DQM60_RS02770 (NCTC7366_00560) | amiC | 537488..538981 (+) | 1494 | WP_014632819.1 | ABC transporter permease | Regulator |
| DQM60_RS02775 (NCTC7366_00561) | amiD | 538981..539907 (+) | 927 | WP_002886846.1 | oligopeptide ABC transporter permease OppC | Regulator |
| DQM60_RS02780 (NCTC7366_00562) | amiE | 539917..541002 (+) | 1086 | WP_037601740.1 | ABC transporter ATP-binding protein | Regulator |
| DQM60_RS02785 (NCTC7366_00563) | amiF | 540995..541924 (+) | 930 | WP_014634820.1 | ATP-binding cassette domain-containing protein | Regulator |
| DQM60_RS02790 (NCTC7366_00564) | - | 541974..542759 (-) | 786 | WP_041826692.1 | hypothetical protein | - |
| DQM60_RS02795 (NCTC7366_00565) | - | 542771..543469 (-) | 699 | WP_014634818.1 | ABC transporter ATP-binding protein | - |
| DQM60_RS02800 (NCTC7366_00566) | - | 543474..543851 (-) | 378 | WP_002884206.1 | GntR family transcriptional regulator | - |
| DQM60_RS02805 (NCTC7366_00567) | - | 544033..544827 (+) | 795 | WP_002884689.1 | HAD-IIB family hydrolase | - |
| DQM60_RS02810 (NCTC7366_00568) | - | 544820..545638 (+) | 819 | WP_070579768.1 | Cof-type HAD-IIB family hydrolase | - |
| DQM60_RS02815 (NCTC7366_00569) | ftsY | 545649..547046 (+) | 1398 | WP_070579770.1 | signal recognition particle-docking protein FtsY | - |
| DQM60_RS02820 (NCTC7366_00570) | gmk | 547280..547909 (+) | 630 | WP_002884259.1 | guanylate kinase | - |
| DQM60_RS02825 (NCTC7366_00571) | rpoZ | 547930..548244 (+) | 315 | WP_013990232.1 | DNA-directed RNA polymerase subunit omega | - |
| DQM60_RS02830 (NCTC7366_00572) | - | 548388..550784 (+) | 2397 | WP_045772232.1 | primosomal protein N' | - |
| DQM60_RS02835 (NCTC7366_00573) | fmt | 550802..551737 (+) | 936 | WP_070579772.1 | methionyl-tRNA formyltransferase | - |
| DQM60_RS02840 (NCTC7366_00574) | rsmB | 551727..553049 (+) | 1323 | WP_111686688.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
Sequence
Protein
Download Length: 361 a.a. Molecular weight: 39981.66 Da Isoelectric Point: 4.6135
>NTDB_id=1138771 DQM60_RS02780 WP_037601740.1 539917..541002(+) (amiE) [Streptococcus salivarius strain NCTC7366]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGQDL
TKLKSHQDWAAIRGAKIATIFQDPMTSLDPIKTIGSQIVEVIVKHQGKSAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGELFSIPGTPPSLYTPVVGDAFALRSDYAMQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVEKPEVIQNLHEKIRTNMGFAHLGDEEEGNA
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGQDL
TKLKSHQDWAAIRGAKIATIFQDPMTSLDPIKTIGSQIVEVIVKHQGKSAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGELFSIPGTPPSLYTPVVGDAFALRSDYAMQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVEKPEVIQNLHEKIRTNMGFAHLGDEEEGNA
Nucleotide
Download Length: 1086 bp
>NTDB_id=1138771 DQM60_RS02780 WP_037601740.1 539917..541002(+) (amiE) [Streptococcus salivarius strain NCTC7366]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGAGTTTCCCTTGATTTGGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGTAAATCAGTTT
TGACCAAGACCTTCACAGGGATGCTTGAAGAAAATGGTCGTGTCGCTAGTGGTTCTATTGATTATCGTGGCCAAGATTTG
ACCAAGCTTAAGAGTCACCAAGATTGGGCAGCAATTCGTGGAGCTAAGATTGCAACTATCTTCCAAGATCCTATGACCAG
TCTTGACCCAATTAAGACTATCGGTAGCCAAATTGTTGAAGTCATTGTCAAACACCAAGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGATTACATGGACAAGGTTGGTATTCCTGATGCTGAAAAACGTTTCAACGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTCATTGCCATTGCCTTGGCTTGTCGTCCTGATGTCCTTATCTGTGACGAGCCAAC
AACTGCCCTTGATGTGACCATTCAAGCTCAAATCATTGACCTTTTGAAATCACTCAAAGAGGAGTATGGTTTCTCAGTGA
TTTTCATTACCCATGACCTTGGTGTGGTAGCAAGTATCGCTGACAAGGTTGCTGTTATGTATGCTGGTGAAATCATCGAG
TACGCAACGGTTGAGGAAATTTTCTATGAGCCTTGTCACCCATACACTTGGAGCTTGCTTTCAAGCTTGCCACAGTTGGC
TGACGATAAGGGTGAGCTTTTCTCTATTCCAGGGACACCACCATCACTTTATACACCAGTTGTTGGAGATGCCTTTGCCT
TGCGTTCAGACTATGCCATGCAAATTGACTTCGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCACCAAAAGTTGAAAAACCTGAGGTTATCCAAAATCTACATGAAAAAATCCGTACTAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGAGTTTCCCTTGATTTGGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGTAAATCAGTTT
TGACCAAGACCTTCACAGGGATGCTTGAAGAAAATGGTCGTGTCGCTAGTGGTTCTATTGATTATCGTGGCCAAGATTTG
ACCAAGCTTAAGAGTCACCAAGATTGGGCAGCAATTCGTGGAGCTAAGATTGCAACTATCTTCCAAGATCCTATGACCAG
TCTTGACCCAATTAAGACTATCGGTAGCCAAATTGTTGAAGTCATTGTCAAACACCAAGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGATTACATGGACAAGGTTGGTATTCCTGATGCTGAAAAACGTTTCAACGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTCATTGCCATTGCCTTGGCTTGTCGTCCTGATGTCCTTATCTGTGACGAGCCAAC
AACTGCCCTTGATGTGACCATTCAAGCTCAAATCATTGACCTTTTGAAATCACTCAAAGAGGAGTATGGTTTCTCAGTGA
TTTTCATTACCCATGACCTTGGTGTGGTAGCAAGTATCGCTGACAAGGTTGCTGTTATGTATGCTGGTGAAATCATCGAG
TACGCAACGGTTGAGGAAATTTTCTATGAGCCTTGTCACCCATACACTTGGAGCTTGCTTTCAAGCTTGCCACAGTTGGC
TGACGATAAGGGTGAGCTTTTCTCTATTCCAGGGACACCACCATCACTTTATACACCAGTTGTTGGAGATGCCTTTGCCT
TGCGTTCAGACTATGCCATGCAAATTGACTTCGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCACCAAAAGTTGAAAAACCTGAGGTTATCCAAAATCTACATGAAAAAATCCGTACTAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| amiE | Streptococcus salivarius strain HSISS4 |
99.169 |
100 |
0.992 |
| amiE | Streptococcus thermophilus LMG 18311 |
96.676 |
100 |
0.967 |
| amiE | Streptococcus thermophilus LMD-9 |
96.676 |
100 |
0.967 |
| oppD | Streptococcus mutans UA159 |
54.728 |
96.676 |
0.529 |