Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   DQM60_RS01020 Genome accession   NZ_LS483366
Coordinates   180287..181327 (+) Length   346 a.a.
NCBI ID   WP_014633662.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC7366     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 182313..183569 180287..181327 flank 986


Gene organization within MGE regions


Location: 180287..183569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM60_RS01020 (NCTC7366_00203) oppD 180287..181327 (+) 1041 WP_014633662.1 ABC transporter ATP-binding protein Regulator
  DQM60_RS01025 (NCTC7366_00204) amiF 181329..182267 (+) 939 WP_014633661.1 ABC transporter ATP-binding protein Regulator
  DQM60_RS01030 (NCTC7366_00205) - 182320..183569 (-) 1250 Protein_146 ISL3 family transposase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38554.29 Da        Isoelectric Point: 5.2741

>NTDB_id=1138751 DQM60_RS01020 WP_014633662.1 180287..181327(+) (oppD) [Streptococcus salivarius strain NCTC7366]
MTKETILSVKNLHVNFHTYAGEVKAIRDVNFDLKKGETLAIVGESGSGKSVTTRTLMGLSDKNAEVIGEITFKGRNMQTL
KEQDWVEVRGNDIAMIFQDPMTSLDPTMKIGHQIAEPIMLHAKVSQKEALEMALQLMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILHLMKKIQEERNSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPKHPYTWGLLNSMPTTETESGSLEAIPGTPPDLLYPPKGDAFAARNAFALDIDYQEEPPMFKVSDTHFAATWLL
DERAPKVTPPSPILKRWEKWSKMKEK

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1138751 DQM60_RS01020 WP_014633662.1 180287..181327(+) (oppD) [Streptococcus salivarius strain NCTC7366]
ATGACGAAAGAAACGATTTTAAGTGTAAAAAATCTCCATGTTAATTTTCATACTTACGCTGGAGAAGTAAAAGCGATTCG
TGATGTTAATTTTGACTTAAAAAAAGGTGAAACATTAGCGATTGTTGGTGAGTCTGGTTCAGGAAAATCTGTAACGACAA
GGACACTAATGGGGCTATCAGATAAAAATGCTGAGGTAATTGGAGAAATTACCTTTAAGGGACGCAATATGCAAACCTTG
AAGGAGCAAGATTGGGTTGAAGTTCGTGGAAATGATATTGCTATGATTTTTCAGGATCCTATGACCAGCCTTGACCCTAC
TATGAAAATTGGACACCAAATTGCTGAGCCTATCATGCTTCATGCCAAGGTATCTCAGAAGGAAGCCTTAGAAATGGCTT
TACAATTAATGAAAGATGTTGGTATACCTAATGCTGAAGAACATATAAATGATTATCCTCATCAATGGTCAGGAGGAATG
CGTCAAAGAGCAGTAATTGCCATTGCTCTAGCGGCAGATCCTGAAATTTTGATTGCTGATGAGCCTACGACAGCCTTAGA
TGTAACGATTCAAGCACAAATTCTTCATCTTATGAAAAAAATTCAAGAAGAGCGTAATTCATCTATTATTTTTATTACTC
ATGACTTGGGCGTTGTCGCTGGTATGGCTGATCGTGTAGCGGTAATGTATGCCGGTAAAATTGTGGAATATGGTACTGTG
GATGAGGTTTTCTACAATCCGAAACACCCATACACGTGGGGGCTTCTTAACTCAATGCCTACAACAGAAACAGAATCTGG
TAGTCTAGAAGCTATTCCAGGAACTCCCCCAGACTTACTTTATCCTCCTAAAGGAGATGCCTTTGCTGCTCGAAATGCCT
TTGCTTTAGATATTGATTATCAGGAAGAACCGCCAATGTTTAAAGTATCAGATACGCATTTTGCAGCAACATGGCTCTTA
GATGAACGAGCTCCTAAAGTAACCCCTCCTTCACCAATATTGAAACGATGGGAAAAATGGTCAAAGATGAAGGAGAAATA
A

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

81.105

99.422

0.806
  amiE Streptococcus salivarius strain HSISS4

57.227

97.977

0.561
  amiE Streptococcus thermophilus LMG 18311

56.637

97.977

0.555
  amiE Streptococcus thermophilus LMD-9

56.637

97.977

0.555

Multiple sequence alignment