Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DQM55_RS08040 Genome accession   NZ_LS483364
Coordinates   1622281..1624083 (-) Length   600 a.a.
NCBI ID   WP_002912044.1    Uniprot ID   F0ITB0
Organism   Streptococcus sanguinis strain NCTC11086     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1617281..1629083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS08025 (NCTC11086_01646) - 1619753..1620334 (-) 582 WP_172454747.1 LURP-one-related/scramblase family protein -
  DQM55_RS08030 (NCTC11086_01648) prsA 1620475..1621482 (-) 1008 WP_002912047.1 peptidylprolyl isomerase PrsA -
  DQM55_RS08035 (NCTC11086_01649) - 1621596..1622279 (-) 684 WP_111676079.1 O-methyltransferase -
  DQM55_RS08040 (NCTC11086_01650) pepF 1622281..1624083 (-) 1803 WP_002912044.1 oligoendopeptidase F Regulator
  DQM55_RS08045 (NCTC11086_01651) coiA 1624119..1625063 (-) 945 WP_111676081.1 competence protein CoiA Machinery gene
  DQM55_RS08050 (NCTC11086_01652) - 1625178..1626347 (-) 1170 WP_111676083.1 MFS transporter -
  DQM55_RS08055 (NCTC11086_01653) - 1626442..1627797 (-) 1356 WP_111676085.1 DUF1958 domain-containing protein -
  DQM55_RS08060 (NCTC11086_01654) nagB 1627947..1628654 (-) 708 WP_002917509.1 glucosamine-6-phosphate deaminase -
  DQM55_RS08065 - 1628789..1628968 (+) 180 WP_002897949.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69159.14 Da        Isoelectric Point: 4.5346

>NTDB_id=1138676 DQM55_RS08040 WP_002912044.1 1622281..1624083(-) (pepF) [Streptococcus sanguinis strain NCTC11086]
MAKQRNEIEEKYTWDLSTIFPTDEAFEEELAQVSEEVKKAAGLAGHLLDSADSLLTTTEVQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMTLYSDFGQSFAFYEPEFMAITEEQYQAFLAEQPALQQYQHYFDKLLKKKAHILTQREEELLAGA
GEIFGAAGETFAILDNADIVFPMVHDEDGNEVQLSHGNYITLVESKNREVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSADFIPESVYDSLVSAVNKHLPLLQRYIALRAKILGISDLKMYDMYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVHENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLKKEDNPQIQYEWARIPHFYYDYYVFQYSTGFSAASALAEKIVHGSQEDKDKYLDYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1138676 DQM55_RS08040 WP_002912044.1 1622281..1624083(-) (pepF) [Streptococcus sanguinis strain NCTC11086]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATATACTTGGGATTTGAGTACCATTTTCCCAACAGATGAAGCCTTTGA
AGAGGAATTGGCTCAGGTTTCAGAAGAAGTGAAGAAAGCAGCTGGTCTGGCTGGGCATTTGCTTGATTCAGCGGACAGTC
TCTTAACAACGACTGAAGTGCAGTTGGACTTGATGCGTCGTATTGAAAAGCTTTATTCTTATGCTCACATGAAGAATGAC
CAAGATACACGTGTGGCTAAGTACCAAGAGTATCAGGCTAAAGGCATGACTCTTTACAGCGACTTTGGCCAAAGCTTTGC
TTTCTATGAGCCAGAATTTATGGCGATTACAGAAGAGCAGTACCAAGCTTTCTTGGCTGAGCAGCCAGCCTTGCAGCAGT
ATCAGCATTATTTTGACAAGCTTTTGAAAAAGAAGGCTCACATCCTGACACAGCGTGAAGAGGAGCTATTGGCGGGTGCT
GGTGAAATTTTTGGTGCAGCGGGCGAAACCTTTGCTATCTTGGATAATGCGGATATTGTCTTTCCGATGGTGCATGATGA
AGATGGAAATGAAGTTCAGCTCAGCCACGGTAACTATATCACCCTGGTCGAGTCTAAGAACCGAGAGGTCCGCAAGGAAG
CTTACGAGGCTCTCTACAGCGTCTACGAGCAGTATCAGCATACCTATGCTAAGACTCTGCAGACCAATGTCAAGGTTCAC
AACTACAATGCGAAAGTCCGCAAGTTCTCATCTGCCCGTGAAGCAGCCTTATCAGCTGACTTTATTCCAGAAAGTGTTTA
TGACAGCTTAGTTTCAGCTGTCAATAAGCATTTGCCTCTCTTGCAGCGTTATATCGCTTTGCGAGCGAAGATTTTAGGCA
TTTCTGACTTGAAGATGTATGATATGTACACACCTTTGTCAGAGACAGACTACAAGTTCACTTATGAGGAAGCCTTGGCT
AAGTCTGAGGAAGTCTTGGCTATTCTGGGTGAGGATTATTTGAGCCGAGTGAAGACAGCCTTCTCAGAGCGCTGGATTGA
TGTTCATGAGAATCAAGGCAAGCGCTCAGGGGCATACTCAGGTGGTTCTTATGATACTAATGCCTTTATGTTACTCAACT
GGCAGGATACGCTGGACAATCTCTTTACCTTGGTGCACGAGACAGGACACAGTATGCATTCCAGCTACACCCGTGAGACT
CAGCCTTATGTCTACGGAGACTATTCTATCTTCCTAGCTGAGATTGCTTCAACGACTAATGAAAATATCCTGACAGAGAA
GCTCTTGGAAGAAGTAGAAGACGATGCTACCCGCTTTGCTATTCTCAACCACTTTTTGGACGGCTTCCGAGGTACGGTCT
TCCGTCAAACCCAGTTTGCGGAGTTTGAGCACGCTATCCACAAGGCTGACCAAGAAGGTCAAGTTTTGACCAGCGAGTTT
CTCAATGAGCTCTACGCTGATTTGAACGAGAAATACTATGGACTGAAAAAAGAAGATAATCCGCAGATTCAGTACGAATG
GGCTCGGATTCCACATTTCTACTATGATTACTATGTTTTCCAATATTCGACAGGATTTTCAGCGGCTTCTGCCCTGGCTG
AAAAGATTGTCCATGGTAGTCAGGAAGACAAGGACAAGTATCTGGACTATCTCAAAGCTGGGAACTCTGACTATCCGCTC
AATGTCATCAAAAAAGCAGGTGTAGATATGGAAAAAGAAGACTACCTAAATGCTGCTTTTGCTGTCTTTGAACGTCGCTT
GGACGAATTCGAAGCCTTGGTGGAAAAGTTGGGATTAGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0ITB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.624

99.333

0.682

Multiple sequence alignment