Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM53_RS10550 Genome accession   NZ_LS483361
Coordinates   2130369..2131082 (+) Length   237 a.a.
NCBI ID   WP_032464617.1    Uniprot ID   A0A9X8T0Q6
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2131211..2136832 2130369..2131082 flank 129


Gene organization within MGE regions


Location: 2130369..2136832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM53_RS10550 (NCTC6179_02163) treR 2130369..2131082 (+) 714 WP_032464617.1 trehalose operon repressor Regulator
  DQM53_RS10555 (NCTC6179_02164) - 2131211..2132652 (+) 1442 Protein_2009 IS1182 family transposase -
  DQM53_RS10565 (NCTC6179_02165) - 2132925..2133263 (-) 339 WP_111717749.1 helix-turn-helix domain-containing protein -
  DQM53_RS10570 (NCTC6179_02166) - 2133449..2134300 (+) 852 WP_111717750.1 VOC family protein -
  DQM53_RS10575 (NCTC6179_02167) yaaA 2134348..2135079 (+) 732 WP_111717751.1 peroxide stress protein YaaA -
  DQM53_RS10580 (NCTC6179_02168) - 2135183..2136624 (+) 1442 Protein_2013 IS1182 family transposase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27661.89 Da        Isoelectric Point: 9.7425

>NTDB_id=1138549 DQM53_RS10550 WP_032464617.1 2130369..2131082(+) (treR) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFRKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1138549 DQM53_RS10550 WP_032464617.1 2130369..2131082(+) (treR) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATCAACAAAGATTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAGTACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCGCTTCTAACCAAGGCAG
GCCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAGCATCATCAGATCATGTTCCCCATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTCGCAAAAACAGCTTGGTCTGGCGTGTCACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATCTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGATCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679

Multiple sequence alignment