Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQM53_RS09710 Genome accession   NZ_LS483361
Coordinates   1962539..1963900 (-) Length   453 a.a.
NCBI ID   WP_111717633.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1957539..1968900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM53_RS09685 (NCTC6179_01988) - 1958259..1959527 (-) 1269 WP_111717629.1 MFS transporter -
  DQM53_RS09690 (NCTC6179_01989) - 1959623..1960324 (-) 702 WP_111717630.1 hypothetical protein -
  DQM53_RS09695 (NCTC6179_01990) - 1960328..1960774 (-) 447 WP_003053367.1 LytTR family DNA-binding domain-containing protein -
  DQM53_RS09700 (NCTC6179_01991) - 1961003..1961719 (-) 717 WP_111717631.1 TIGR00266 family protein -
  DQM53_RS09705 (NCTC6179_01992) - 1961855..1962349 (-) 495 WP_111717632.1 carbonic anhydrase -
  DQM53_RS09710 (NCTC6179_01993) radA 1962539..1963900 (-) 1362 WP_111717633.1 DNA repair protein RadA Machinery gene
  DQM53_RS09715 (NCTC6179_01994) - 1963983..1964429 (-) 447 WP_111717634.1 dUTP diphosphatase -
  DQM53_RS09720 (NCTC6179_01995) - 1964537..1965304 (-) 768 WP_111717635.1 epoxyqueuosine reductase QueH -
  DQM53_RS09725 (NCTC6179_01996) - 1965423..1967207 (-) 1785 WP_111717636.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49385.69 Da        Isoelectric Point: 6.0944

>NTDB_id=1138546 DQM53_RS09710 WP_111717633.1 1962539..1963900(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPVKLKDVDNISYHRTQTDMAEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESTEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NLNPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGISIPNGIEVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1138546 DQM53_RS09710 WP_111717633.1 1962539..1963900(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6179]
ATAGCAAAGAAAAAAGCAACCTTCATTTGTCAAGAATGTGGGTATCAGTCACCCAAATATTTAGGGCGTTGCCCAAACTG
CTCGGCCTGGTCTTCCTTTGTGGAAGAAGTTGAGGTCAAAGAGGTTAAAAATGCTCGTGTCAGTTTGACAGGTGAGAAAA
GTAAGCCCGTTAAATTAAAAGATGTGGACAATATCAGCTATCATCGGACACAGACCGATATGGCAGAGTTTAACCGTGTC
CTTGGTGGCGGTGTCGTTCCGGGGAGCTTGATTTTAATTGGTGGGGATCCAGGTATTGGGAAGTCCACCCTGCTCTTGCA
AGTATCCACCCAGCTAGCTAATAAGGGAACTGTTCTGTATGTTTCTGGGGAAGAATCAACAGAGCAGATTAAACTGCGGA
GTGAGCGCCTGGGAGATATTGACAATGAATTTTACCTCTATGCTGAAACCAATATGCAGGCCATTCGTACAGAGATTGAA
AACCTGAATCCAGATTTCTTGATTATTGATTCTATCCAAACCATTATGAGTCCTGATATTACAGGTGTTCAAGGATCAGT
GAGTCAGGTGAGAGAAGTCACTGCCGAATTGATGCAACTTGCAAAGACTAACAACATTGCAACCTTTATTGTAGGACATG
TTACTAAGGAAGGAACCTTAGCTGGTCCCCGTATGTTAGAACATATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCATACTTTTCGCATCCTGCGGGCGGTGAAAAACCGTTTTGGCTCTACCAACGAGATCGGTATTTTTGAAATGCAATC
AGCTGGACTCGTTGAGGTCTTAAACCCAAGCCAAGTTTTTCTTGAAGAACGATTAGATGGTGCTACAGGCTCCGCCATTG
TGGTGACCATGGAGGGTAGTCGTCCAATTTTAGCGGAAGTCCAATCTTTGGTAACCCCAACCGTTTTTGGTAATGCTAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATCATGGCAGTCTTAGAAAAACGCTGTGGGCTTCTCTTGCA
AAATCAAGATGCCTACCTCAAATCGGCTGGTGGTGTCAAGCTAGACGAACCTGCTATTGATTTAGCTGTAGCCGTAGCCA
TCGCATCCAGTTATAAAGAAAAACCAACCAACCCTCAAGAAGCCTTCTTAGGAGAGATTGGGTTGACTGGTGAGATTCGG
CGGGTGACCCGTATCGAACAACGAATTAATGAAGCAGCCAAGCTTGGTTTTACTAAAATTTACGCCCCTAAAAATGCTCT
GCAGGGCATCAGTATTCCTAATGGTATTGAAGTGGTGGGTGTGACAACAGTTGGTCAGGTTTTAAAGGCCGTTTTTGGCT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(57-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

86.504

99.779

0.863
  radA Streptococcus pneumoniae Rx1

86.283

99.779

0.861
  radA Streptococcus pneumoniae D39

86.283

99.779

0.861
  radA Streptococcus pneumoniae R6

86.283

99.779

0.861
  radA Streptococcus pneumoniae TIGR4

86.283

99.779

0.861
  radA Streptococcus mitis SK321

86.283

99.779

0.861
  radA Bacillus subtilis subsp. subtilis str. 168

61.926

100

0.625

Multiple sequence alignment