Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM47_RS09410 Genome accession   NZ_LS483360
Coordinates   1823087..1823800 (+) Length   237 a.a.
NCBI ID   WP_002982243.1    Uniprot ID   A0A9X5LXW4
Organism   Streptococcus pyogenes strain NCTC10876     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1818087..1828800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM47_RS09400 (NCTC10876_01867) treC 1819157..1820785 (-) 1629 WP_023610760.1 alpha,alpha-phosphotrehalase -
  DQM47_RS09405 (NCTC10876_01868) treP 1820852..1822876 (-) 2025 WP_023610715.1 PTS system trehalose-specific EIIBC component -
  DQM47_RS09410 (NCTC10876_01869) treR 1823087..1823800 (+) 714 WP_002982243.1 trehalose operon repressor Regulator
  DQM47_RS09420 (NCTC10876_01870) - 1824079..1824416 (-) 338 Protein_1770 winged helix-turn-helix transcriptional regulator -
  DQM47_RS09425 (NCTC10876_01871) - 1824603..1825460 (+) 858 WP_023610754.1 VOC family protein -
  DQM47_RS09430 (NCTC10876_01872) yaaA 1825502..1826233 (+) 732 WP_023610692.1 peroxide stress protein YaaA -
  DQM47_RS09435 (NCTC10876_01873) nrdG 1826407..1827021 (-) 615 WP_021775544.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQM47_RS09440 (NCTC10876_01874) - 1827036..1827530 (-) 495 WP_014407930.1 GNAT family N-acetyltransferase -
  DQM47_RS09445 (NCTC10876_01875) - 1827539..1828474 (-) 936 WP_023610759.1 Gfo/Idh/MocA family protein -
  DQM47_RS09940 (NCTC10876_01876) - 1828503..1828649 (-) 147 WP_023610752.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27592.78 Da        Isoelectric Point: 9.6226

>NTDB_id=1138488 DQM47_RS09410 WP_002982243.1 1823087..1823800(+) (treR) [Streptococcus pyogenes strain NCTC10876]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1138488 DQM47_RS09410 WP_002982243.1 1823087..1823800(+) (treR) [Streptococcus pyogenes strain NCTC10876]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTCTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCGCTTCTCACTAAGGCAG
GCCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAGCATCATCAGATCATGTTCCCCATCTCAGAACTAACT
AGCTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679

Multiple sequence alignment