Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   DQM47_RS03080 Genome accession   NZ_LS483360
Coordinates   595173..596210 (+) Length   345 a.a.
NCBI ID   WP_010922499.1    Uniprot ID   A0A4U9I5V9
Organism   Streptococcus pyogenes strain NCTC10876     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 590173..601210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM47_RS03055 (NCTC10876_00602) - 590437..591768 (+) 1332 WP_023610927.1 dipeptidase -
  DQM47_RS03060 (NCTC10876_00603) arcC 591788..592738 (+) 951 WP_010922501.1 carbamate kinase -
  DQM47_RS03065 (NCTC10876_00604) asnA 593051..594043 (+) 993 WP_002983817.1 aspartate--ammonia ligase -
  DQM47_RS03070 (NCTC10876_00605) rsmD 594166..594705 (+) 540 WP_002983819.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DQM47_RS03075 (NCTC10876_00606) coaD 594695..595186 (+) 492 WP_002983821.1 pantetheine-phosphate adenylyltransferase -
  DQM47_RS03080 (NCTC10876_00607) sepM 595173..596210 (+) 1038 WP_010922499.1 SepM family pheromone-processing serine protease Regulator
  DQM47_RS03085 (NCTC10876_00608) - 596615..597592 (+) 978 WP_023610939.1 LacI family DNA-binding transcriptional regulator -
  DQM47_RS03090 (NCTC10876_00610) - 598040..598660 (+) 621 WP_023610891.1 YutD family protein -
  DQM47_RS03095 (NCTC10876_00611) rlmN 598664..599743 (+) 1080 WP_002992788.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  DQM47_RS03100 (NCTC10876_00612) - 599825..600451 (-) 627 WP_002989076.1 prepilin peptidase -
  DQM47_RS03105 (NCTC10876_00613) - 600679..601206 (+) 528 WP_002983837.1 Dps family protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37541.24 Da        Isoelectric Point: 9.6692

>NTDB_id=1138464 DQM47_RS03080 WP_010922499.1 595173..596210(+) (sepM) [Streptococcus pyogenes strain NCTC10876]
MKRLKKIKWWLVGLLALISLLLALFFPLPYYIEMPGGAYDIRTVLQVNGKEDKRKGAYQFVAVGISRASLAQLLYAWLTP
FTEISTAEDTTGGYSDADFLRINQFYMETSQNAAIYQALSLAGKPVTLDYKGVYVLDVNNESTFKGTLHLADTVTGVNGK
QFTSSAELIDYVSHLKLGDEVTVQFTSDNKPKKGVGRIIKLKNGKNGIGIALTDHTSVNSEDTVIFSTKGVGGPSAGLMF
TLDIYDQITKEDLRKGRTIAGTGTIGKDGEVGDIGGAGLKVVAAAEAGADIFFVPNNPVDKEIKKVNPNAISNYEEAKRA
AKRLKTKMKIVPVTTVQEALVYLRK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1138464 DQM47_RS03080 WP_010922499.1 595173..596210(+) (sepM) [Streptococcus pyogenes strain NCTC10876]
ATGAAAAGACTTAAAAAAATCAAATGGTGGTTAGTGGGTCTGCTAGCTTTAATCTCTTTGTTGCTAGCGTTATTTTTTCC
GCTACCTTATTATATTGAAATGCCTGGAGGCGCTTACGATATTCGGACTGTCTTACAAGTCAATGGCAAAGAAGACAAAC
GAAAAGGAGCTTACCAGTTTGTTGCAGTGGGCATTAGTCGTGCCAGCCTCGCGCAGCTATTATATGCTTGGCTGACACCG
TTTACTGAAATTAGTACAGCAGAAGATACAACAGGCGGATACAGCGATGCTGATTTCCTTCGAATTAATCAATTTTACAT
GGAAACATCACAAAATGCAGCTATTTATCAAGCTTTATCCTTAGCTGGAAAACCAGTTACATTAGATTATAAAGGCGTAT
ATGTTTTAGACGTAAACAACGAATCTACTTTTAAAGGAACGTTACACTTAGCAGATACTGTAACAGGTGTAAATGGTAAA
CAGTTTACTAGTTCAGCAGAACTTATTGACTATGTTTCTCACCTAAAACTAGGGGATGAAGTTACGGTTCAGTTTACGAG
TGATAATAAGCCTAAAAAAGGAGTTGGCCGTATTATCAAACTGAAAAATGGGAAAAATGGGATTGGCATTGCCTTGACTG
ATCATACAAGTGTCAATTCAGAAGACACAGTGATCTTTAGTACTAAAGGAGTAGGAGGACCTAGTGCTGGTCTAATGTTT
ACTCTTGATATATATGATCAAATAACTAAAGAAGATTTACGCAAGGGCCGTACAATTGCAGGTACAGGAACTATTGGCAA
GGATGGCGAAGTAGGAGATATTGGTGGTGCAGGTCTTAAAGTAGTTGCAGCAGCTGAAGCTGGTGCAGATATATTTTTTG
TTCCGAATAATCCTGTTGATAAGGAAATTAAAAAAGTTAATCCAAATGCTATAAGTAATTACGAAGAAGCCAAACGGGCA
GCCAAACGACTAAAGACCAAAATGAAGATTGTTCCTGTTACGACTGTTCAAGAGGCACTGGTTTATCTTCGCAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4U9I5V9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

69.275

100

0.693


Multiple sequence alignment