Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DQL29_RS08850 Genome accession   NZ_LS483359
Coordinates   53935..54033 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12068     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 48935..59033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL29_RS00315 (NCTC12068_00063) purK 48997..50070 (+) 1074 WP_030126530.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  DQL29_RS00320 (NCTC12068_00064) - 50072..51490 (+) 1419 WP_011888524.1 hypothetical protein -
  DQL29_RS00325 (NCTC12068_00065) purB 51510..52802 (+) 1293 WP_111717783.1 adenylosuccinate lyase -
  DQL29_RS00330 (NCTC12068_00066) comR 52933..53844 (+) 912 WP_020904818.1 helix-turn-helix domain-containing protein Regulator
  DQL29_RS08850 (NCTC12068_00067) comS 53935..54033 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  DQL29_RS00335 (NCTC12068_00068) ruvB 54064..55062 (+) 999 WP_011054100.1 Holliday junction branch migration DNA helicase RuvB -
  DQL29_RS00340 (NCTC12068_00069) - 55200..55637 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  DQL29_RS00345 (NCTC12068_00070) - 55660..56061 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  DQL29_RS00350 (NCTC12068_00071) - 56058..57833 (+) 1776 WP_002987732.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=1138438 DQL29_RS08850 WP_020833188.1 53935..54033(+) (comS) [Streptococcus pyogenes strain NCTC12068]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=1138438 DQL29_RS08850 WP_020833188.1 53935..54033(+) (comS) [Streptococcus pyogenes strain NCTC12068]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437

Multiple sequence alignment