Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQL29_RS08300 Genome accession   NZ_LS483359
Coordinates   1668137..1668850 (+) Length   237 a.a.
NCBI ID   WP_111718024.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC12068     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1663137..1673850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL29_RS08290 (NCTC12068_01633) treC 1664206..1665834 (-) 1629 WP_111718022.1 alpha,alpha-phosphotrehalase -
  DQL29_RS08295 (NCTC12068_01634) treP 1665902..1667926 (-) 2025 WP_111718023.1 PTS system trehalose-specific EIIBC component -
  DQL29_RS08300 (NCTC12068_01635) treR 1668137..1668850 (+) 714 WP_111718024.1 trehalose operon repressor Regulator
  DQL29_RS08310 (NCTC12068_01636) - 1669129..1669467 (-) 339 Protein_1534 winged helix-turn-helix transcriptional regulator -
  DQL29_RS08315 (NCTC12068_01637) - 1669653..1670510 (+) 858 WP_111711508.1 VOC family protein -
  DQL29_RS08320 (NCTC12068_01638) yaaA 1670552..1671283 (+) 732 WP_111718025.1 peroxide stress protein YaaA -
  DQL29_RS08325 (NCTC12068_01639) nrdG 1671457..1672071 (-) 615 WP_021775544.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQL29_RS08330 (NCTC12068_01640) - 1672086..1672580 (-) 495 WP_014407930.1 GNAT family N-acetyltransferase -
  DQL29_RS08335 (NCTC12068_01641) - 1672589..1673524 (-) 936 WP_111718026.1 Gfo/Idh/MocA family protein -
  DQL29_RS08820 (NCTC12068_01642) - 1673553..1673699 (-) 147 WP_030126184.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27573.73 Da        Isoelectric Point: 9.4759

>NTDB_id=1138433 DQL29_RS08300 WP_111718024.1 1668137..1668850(+) (treR) [Streptococcus pyogenes strain NCTC12068]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESHHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1138433 DQL29_RS08300 WP_111718024.1 1668137..1668850(+) (treR) [Streptococcus pyogenes strain NCTC12068]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTCGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCACCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675

Multiple sequence alignment