Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   DQM46_RS10110 Genome accession   NZ_LS483357
Coordinates   55343..55438 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8326     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 50343..60438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM46_RS00330 (NCTC8326_00066) - 51532..52263 (+) 732 WP_060388492.1 HNH endonuclease -
  DQM46_RS00335 (NCTC8326_00067) purB 52924..54216 (+) 1293 WP_011528142.1 adenylosuccinate lyase -
  DQM46_RS00340 (NCTC8326_00068) comR 54348..55259 (+) 912 WP_011528143.1 transcriptional regulator Rgg4/ComR Regulator
  DQM46_RS10110 (NCTC8326_00069) comS 55343..55438 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  DQM46_RS00345 (NCTC8326_00070) ruvB 55485..56483 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  DQM46_RS00350 (NCTC8326_00071) - 56621..57058 (+) 438 WP_002987727.1 low molecular weight protein-tyrosine-phosphatase -
  DQM46_RS00355 (NCTC8326_00072) - 57082..57483 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  DQM46_RS00360 (NCTC8326_00073) - 57480..59255 (+) 1776 WP_011528145.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=1138357 DQM46_RS10110 WP_198462994.1 55343..55438(+) (comS) [Streptococcus pyogenes strain NCTC8326]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=1138357 DQM46_RS10110 WP_198462994.1 55343..55438(+) (comS) [Streptococcus pyogenes strain NCTC8326]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452

Multiple sequence alignment