Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DQM51_RS09620 Genome accession   NZ_LS483356
Coordinates   1832887..1833600 (+) Length   237 a.a.
NCBI ID   WP_002982243.1    Uniprot ID   A0A9X5LXW4
Organism   Streptococcus pyogenes strain NCTC8230     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1827887..1838600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM51_RS09610 (NCTC8230_01905) treC 1828956..1830584 (-) 1629 WP_002982249.1 alpha,alpha-phosphotrehalase -
  DQM51_RS09615 (NCTC8230_01906) treP 1830652..1832676 (-) 2025 WP_111713418.1 PTS system trehalose-specific EIIBC component -
  DQM51_RS09620 (NCTC8230_01907) treR 1832887..1833600 (+) 714 WP_002982243.1 trehalose operon repressor Regulator
  DQM51_RS09630 (NCTC8230_01908) - 1833879..1834198 (-) 320 Protein_1808 winged helix-turn-helix transcriptional regulator -
  DQM51_RS09635 (NCTC8230_01909) - 1834384..1835241 (+) 858 WP_002982226.1 VOC family protein -
  DQM51_RS09640 (NCTC8230_01910) yaaA 1835283..1836014 (+) 732 WP_002982222.1 peroxide stress protein YaaA -
  DQM51_RS09645 (NCTC8230_01911) nrdG 1836188..1836802 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQM51_RS09650 (NCTC8230_01912) - 1836802..1837311 (-) 510 WP_002991345.1 GNAT family N-acetyltransferase -
  DQM51_RS09655 (NCTC8230_01913) - 1837320..1838255 (-) 936 WP_111713419.1 Gfo/Idh/MocA family protein -
  DQM51_RS10295 (NCTC8230_01914) - 1838284..1838430 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27592.78 Da        Isoelectric Point: 9.6226

>NTDB_id=1138296 DQM51_RS09620 WP_002982243.1 1832887..1833600(+) (treR) [Streptococcus pyogenes strain NCTC8230]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1138296 DQM51_RS09620 WP_002982243.1 1832887..1833600(+) (treR) [Streptococcus pyogenes strain NCTC8230]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTTTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679

Multiple sequence alignment