Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   DQL13_RS09835 Genome accession   NZ_LS483354
Coordinates   2070447..2071220 (+) Length   257 a.a.
NCBI ID   WP_012516521.1    Uniprot ID   B4U128
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11606     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2065447..2076220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL13_RS09825 (NCTC11606_01975) rlmH 2068415..2068894 (-) 480 WP_012516519.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DQL13_RS09830 (NCTC11606_01976) htrA 2069104..2070327 (+) 1224 WP_012516520.1 S1C family serine protease Regulator
  DQL13_RS09835 (NCTC11606_01977) spo0J 2070447..2071220 (+) 774 WP_012516521.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 257 a.a.        Molecular weight: 29144.80 Da        Isoelectric Point: 9.8971

>NTDB_id=1138191 DQL13_RS09835 WP_012516521.1 2070447..2071220(+) (spo0J) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
MTEILMHIPIEDIVANPYQPRLQFNQKELEELAHSIQANGLIQPIIVRKSDVFGYELVAGERRFKAAKLAGLQKIPAIVK
EISTLESMQQAIVENLQRSNLNAIEEAKAYQLLIDKNKMTHEDIATYMGKSRPYISNTIRLLQLPDVIKQAIEDSTISAG
HARALLSLSTPKEQELYFHNILDQGLSVRQIEQLVKAKHHPQKRSKHKTIFVKSLEKELSKSLGLPVALSLKKNDSGQLQ
LSFSNQEELNRIINKLK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1138191 DQL13_RS09835 WP_012516521.1 2070447..2071220(+) (spo0J) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
ATGACAGAAATCCTAATGCACATTCCTATCGAGGATATTGTGGCAAATCCTTATCAACCACGTCTTCAATTTAATCAAAA
AGAGCTTGAGGAGCTGGCACATTCCATTCAGGCTAATGGTTTGATTCAACCAATCATTGTCAGAAAATCTGATGTATTTG
GCTATGAATTAGTCGCTGGAGAACGACGCTTTAAAGCAGCCAAGCTGGCAGGACTTCAAAAGATTCCAGCAATTGTTAAG
GAAATCTCTACTCTTGAGAGCATGCAGCAGGCCATCGTAGAAAACCTACAGCGCTCAAATTTAAATGCTATTGAAGAGGC
TAAGGCCTATCAATTACTCATTGATAAAAATAAGATGACCCATGAGGACATCGCGACATACATGGGAAAATCACGCCCTT
ATATCAGCAACACCATCAGGCTGCTGCAACTACCAGACGTTATTAAACAAGCGATTGAGGACAGTACCATTAGTGCTGGA
CATGCAAGAGCCTTATTATCCTTGTCAACACCAAAAGAGCAGGAGCTTTATTTTCACAACATTCTGGATCAAGGCTTAAG
CGTTAGGCAAATCGAACAGCTGGTAAAAGCTAAGCATCACCCCCAAAAAAGAAGCAAACATAAAACCATTTTTGTGAAGT
CTTTAGAAAAAGAGCTCTCAAAATCATTAGGATTACCTGTGGCATTGTCTCTCAAAAAAAATGACAGTGGGCAGCTGCAG
CTATCATTTTCAAACCAAGAAGAATTGAACAGAATTATCAACAAGCTAAAGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB B4U128

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

61.719

99.611

0.615


Multiple sequence alignment