Detailed information NTG1138161

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: DQL13_RS05465
• Genome accession: NZ_LS483354
• Coordinates: 1141433..1143526 (+)
• Length: 697 a.a.
• NCBI ID: WP_012515692.1
• Uniprot ID: A0AAW3GM39
• Organism: Streptococcus equi subsp. zooepidemicus strain NCTC11606
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1136433..1148526

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL13_RS05445 (NCTC11606_01082)	-	1136626..1137909 (-)	1284	WP_111721693.1	homoserine dehydrogenase	-
DQL13_RS05450 (NCTC11606_01083)	-	1138081..1139046 (+)	966	WP_021320810.1	polysaccharide deacetylase family protein	-
DQL13_RS05455 (NCTC11606_01084)	-	1139336..1140142 (-)	807	WP_012515689.1	DNA/RNA non-specific endonuclease	-
DQL13_RS05460 (NCTC11606_01085)	ndk	1140643..1141062 (-)	420	WP_012515690.1	nucleoside-diphosphate kinase	-
DQL13_RS05465 (NCTC11606_01086)	clpC	1141433..1143526 (+)	2094	WP_012515692.1	AAA family ATPase	Regulator
DQL13_RS05470 (NCTC11606_01087)	hupY	1143710..1146721 (-)	3012	WP_012515693.1	leucine-rich repeat adhesin HupY/LrrG	-
DQL13_RS05475 (NCTC11606_01088)	yihA	1147083..1147682 (-)	600	WP_041785521.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-

Sequence

Protein

• Length: 697 a.a.
• Molecular weight: 76753.75 Da
• Isoelectric Point: 5.1207

>NTDB_id=1138161 DQL13_RS05465 WP_012515692.1 1141433..1143526(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
MTTYYGKDPFGNMDDIFNQLMGNIGGYRSENRRYLVNGREMTPEEFQEYRKTGKLAATEGQDKQAGSLKKDGILTKLGTN
LTEEARQGRLDPVIGRNDEIQATAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGSFEENIQNMVKEVKEAGNIILFFDEIHQILGAGSAGSDSGSKGLADILKPALSRGELTLIGATTQDEYRNTILK
NAALARRFNEVKVNAPSAEDTFHILMGIRNLYEQHHNVILPDSVLKAAIDYAIQYIPQRSLPDKAIDLVDMTAAHLAAQH
PVTDLKSLEAEIAKQKELQEKAVAEEDFEKALTAKTRIEELQKQINHHSEGQKVTATVNDIAESVERLTGVPVSNMGAND
LERLKEISNRLKGHVIGQDGAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMS
EYSDRTAVSKLIGTTAGYVGYDDNQNTLTERVRRSPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFKNTVI
IATSNAGFGHQAGDSADQEPAIMERIAPYFRPEFLNRFNGVIEFNHLAKKDLQEIVALMLAEVNQTLAKKGISLEVTDDV
KERLIDLGYDHAMGVRPLRRVIEQEIRDRITDYYLDHPTAKHLLASLDQDTITISEK

Nucleotide

• Length: 2094 bp

>NTDB_id=1138161 DQL13_RS05465 WP_012515692.1 1141433..1143526(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
ATGACAACTTATTATGGAAAAGACCCCTTTGGAAATATGGACGATATTTTCAATCAATTAATGGGAAACATTGGTGGCTA
TCGCAGTGAAAATCGGCGCTATCTTGTCAATGGACGTGAGATGACACCAGAGGAATTTCAGGAATACCGGAAAACCGGTA
AGCTAGCTGCAACTGAAGGACAAGACAAACAGGCTGGTAGCCTTAAAAAAGACGGCATTCTAACCAAGCTCGGAACAAAT
CTGACTGAAGAAGCTCGTCAAGGAAGGCTAGATCCTGTCATCGGACGAAACGATGAGATTCAAGCAACCGCAGAAATTCT
AGCTAGGCGAACCAAGAATAACCCTGTGCTTGTCGGTGACGCTGGCGTTGGTAAAACTGCTGTTGTCGAAGGTTTAGCCC
AGGCTATCGTCAATGGTGATGTGCCAGCTGCTATCAAAAATAAAGAGATTATCTCAATTGATATTTCTGGCCTTGAGGCT
GGCACACAGTATCGTGGCTCCTTTGAAGAAAACATTCAAAACATGGTTAAAGAGGTTAAAGAGGCTGGTAATATTATCCT
CTTCTTTGACGAAATTCATCAAATCCTTGGTGCAGGGTCAGCTGGTTCAGACTCAGGCTCTAAAGGCTTGGCTGATATTC
TAAAGCCAGCCCTCTCACGCGGTGAGTTGACCTTGATTGGTGCCACAACTCAAGATGAGTATCGCAATACTATTTTAAAA
AATGCTGCCCTTGCTCGTCGTTTCAACGAGGTTAAGGTTAATGCTCCTTCAGCAGAGGATACCTTCCACATATTGATGGG
CATTCGCAACCTCTACGAGCAGCACCACAATGTGATCCTGCCAGATTCTGTCTTGAAAGCAGCTATTGATTATGCTATCC
AATATATTCCACAACGAAGCCTGCCTGATAAAGCCATTGACCTTGTTGATATGACGGCTGCCCACCTAGCAGCTCAGCAC
CCTGTCACTGATCTAAAGTCACTTGAAGCAGAAATCGCTAAGCAAAAGGAGCTACAGGAAAAGGCTGTTGCAGAAGAAGA
CTTTGAAAAGGCCTTAACTGCTAAGACACGCATTGAGGAGCTTCAAAAGCAAATCAATCATCACAGTGAAGGGCAAAAGG
TCACTGCCACCGTCAATGATATTGCAGAATCTGTTGAACGACTAACTGGTGTCCCAGTCTCAAATATGGGGGCTAATGAT
TTAGAAAGGCTCAAAGAAATCAGTAATCGTCTTAAAGGCCATGTTATCGGACAAGATGGTGCAGTTGAGGCTGTTGCTCG
TGCGATTCGACGCAACCGCGCAGGCTTTGATGACGGTAATCGCCCAATTGGCTCCTTCCTCTTTGTTGGCCCAACTGGTG
TTGGTAAGACCGAGCTGGCTAAGCAGTTAGCCCTTGATATGTTCGGCTCAAAGGACGCTATCATTCGCTTAGATATGTCT
GAATATAGTGACCGCACAGCTGTTTCCAAATTAATCGGAACAACAGCTGGCTATGTTGGCTATGATGATAATCAAAATAC
CCTTACAGAACGTGTCCGTCGCAGTCCTTACTCTATCATCTTGCTTGATGAAATCGAAAAAGCAGACCCACAGGTCATTA
CACTGCTTCTTCAAGTGCTTGATGATGGGCGATTGACAGATGGACAAGGCAACACGATCAATTTCAAAAATACGGTTATC
ATCGCAACCTCTAATGCTGGTTTTGGCCATCAAGCAGGAGATAGTGCTGATCAAGAGCCTGCTATCATGGAGCGTATTGC
ACCTTACTTTAGACCAGAATTCTTGAATCGCTTCAACGGTGTCATCGAATTCAACCATTTAGCGAAAAAGGATCTACAAG
AAATCGTTGCTTTAATGCTAGCAGAGGTGAACCAAACCCTTGCTAAAAAAGGGATTAGCCTTGAGGTGACTGACGATGTT
AAAGAGCGTTTGATTGATCTGGGCTATGATCATGCAATGGGAGTTCGTCCACTTAGACGTGTCATCGAACAAGAAATTCG
TGACCGCATTACGGATTACTACCTGGATCACCCGACTGCTAAACACCTATTAGCAAGCCTTGATCAAGATACTATTACGA
TAAGTGAGAAGTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (607-679)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

• AAA lid domain (AAA_lid_9) (257-352)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.063	100	0.481
clpE	Streptococcus mutans UA159	48.17	97.991	0.472
clpE	Streptococcus pneumoniae D39	50.952	90.387	0.461
clpE	Streptococcus pneumoniae R6	50.952	90.387	0.461
clpE	Streptococcus pneumoniae Rx1	50.952	90.387	0.461
clpE	Streptococcus pneumoniae TIGR4	50.952	90.387	0.461
clpC	Bacillus subtilis subsp. subtilis str. 168	45.833	89.527	0.41
clpC	Streptococcus mutans UA159	43.226	88.953	0.385
clpC	Streptococcus pneumoniae Rx1	43.678	87.374	0.382
clpC	Streptococcus pneumoniae D39	43.678	87.374	0.382
clpC	Streptococcus pneumoniae TIGR4	43.514	87.374	0.38
clpC	Streptococcus thermophilus LMD-9	42.718	88.666	0.379
clpC	Streptococcus thermophilus LMG 18311	42.557	88.666	0.377
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.326	88.809	0.376