Detailed information NTG1138144

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: DQL13_RS01755
• Genome accession: NZ_LS483354
• Coordinates: 342130..343065 (+)
• Length: 311 a.a.
• NCBI ID: WP_012514940.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain NCTC11606
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 337130..348065

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL13_RS01735 (NCTC11606_00344)	-	337291..338949 (+)	1659	WP_012514936.1	peptide ABC transporter substrate-binding protein	-
DQL13_RS01740 (NCTC11606_00345)	-	339116..340030 (+)	915	WP_012514937.1	ABC transporter permease	-
DQL13_RS01745 (NCTC11606_00346)	-	340040..341071 (+)	1032	WP_012514938.1	ABC transporter permease	-
DQL13_RS01750 (NCTC11606_00347)	oppD	341084..342130 (+)	1047	WP_012514939.1	ABC transporter ATP-binding protein	Regulator
DQL13_RS01755 (NCTC11606_00348)	amiF	342130..343065 (+)	936	WP_012514940.1	ABC transporter ATP-binding protein	Regulator
DQL13_RS01760 (NCTC11606_00349)	rnjA	343687..345369 (-)	1683	WP_012514941.1	ribonuclease J1	-
DQL13_RS01765 (NCTC11606_00350)	-	345371..345601 (-)	231	WP_012514942.1	DNA-dependent RNA polymerase subunit epsilon	-
DQL13_RS01770 (NCTC11606_00351)	tsaB	345887..346585 (+)	699	WP_012514943.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
DQL13_RS01775 (NCTC11606_00352)	rimI	346588..347013 (+)	426	WP_012514944.1	ribosomal protein S18-alanine N-acetyltransferase	-
DQL13_RS01780 (NCTC11606_00353)	tsaD	347003..348019 (+)	1017	WP_111721635.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35067.17 Da
• Isoelectric Point: 8.3565

>NTDB_id=1138144 DQL13_RS01755 WP_012514940.1 342130..343065(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERRRIAEVYDPSQELDGQERQMYEITPGHFVLATQAEADQYRAERGL

Nucleotide

• Length: 936 bp

>NTDB_id=1138144 DQL13_RS01755 WP_012514940.1 342130..343065(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACGA
CAGTTGGTCGAGCTATTTTGAAACTGTATGACATTAGTGATGGTGAGATTATCTTTAACGGAGAAAATGTCTCCCAATTA
AAAGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCACAAATGATCTTCCAAGATCCTCAGGCTAGTCTGAACGGCCGTAT
GAAAATTAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AGGAGCTGTTAAAGCTTGTTGGGCTCAATCAGGACCATTTGACGCGCTACCCACATGAATTTTCCGGTGGTCAACGCCAG
CGCATTGGCATTGCGCGTGCCTTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAGAAGCGCGGCTTGACCTATCTCTTTATCGCACACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGAACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAG
GCGCATTGCAGAGGTTTATGATCCTAGTCAAGAGCTAGATGGCCAAGAGCGGCAAATGTATGAAATCACTCCTGGGCATT
TTGTTTTAGCGACGCAGGCCGAAGCCGATCAGTATCGAGCAGAGCGTGGCCTCTAA

Domains

Predicted by InterProScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.922	98.392	0.531
amiF	Streptococcus thermophilus LMG 18311	53.595	98.392	0.527
amiF	Streptococcus salivarius strain HSISS4	53.268	98.392	0.524