Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DQL13_RS01240 Genome accession   NZ_LS483354
Coordinates   238432..239793 (+) Length   453 a.a.
NCBI ID   WP_012514884.1    Uniprot ID   B4U0R5
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11606     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 233432..244793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL13_RS01225 (NCTC11606_00245) - 235015..236811 (+) 1797 WP_012514881.1 ABC transporter ATP-binding protein -
  DQL13_RS01230 (NCTC11606_00246) - 236973..237740 (+) 768 WP_012514882.1 epoxyqueuosine reductase QueH -
  DQL13_RS01235 (NCTC11606_00247) - 237920..238366 (+) 447 WP_012514883.1 dUTP diphosphatase -
  DQL13_RS01240 (NCTC11606_00248) radA 238432..239793 (+) 1362 WP_012514884.1 DNA repair protein RadA Machinery gene
  DQL13_RS01245 (NCTC11606_00249) - 239954..240229 (-) 276 WP_041785238.1 hypothetical protein -
  DQL13_RS01250 (NCTC11606_00250) - 240564..241070 (+) 507 WP_012514885.1 beta-class carbonic anhydrase -
  DQL13_RS01255 (NCTC11606_00251) - 241198..241911 (+) 714 WP_012514886.1 TIGR00266 family protein -
  DQL13_RS01260 (NCTC11606_00252) gltX 242513..243958 (+) 1446 WP_012514887.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49333.77 Da        Isoelectric Point: 6.7545

>NTDB_id=1138142 DQL13_RS01240 WP_012514884.1 238432..239793(+) (radA) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEETEVKDVKNARISLTGEKSKPIKLKHVNGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDIPSGIEVVGVMTVGEVLKAVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1138142 DQL13_RS01240 WP_012514884.1 238432..239793(+) (radA) [Streptococcus equi subsp. zooepidemicus strain NCTC11606]
ATAGCTAAGAAAAAGGCAAGGTTTATCTGTGGGGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGCTGCCCTAATTG
CTCTGCTTGGTCTTCCTTTGTAGAGGAGACAGAGGTCAAGGACGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAGA
GTAAGCCCATCAAGCTAAAGCATGTCAATGGCGTTCGCTACCAGCGTATCCAGACTGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGAGGTGTTGTACCGGGGAGCTTGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACGCTGCTCTTGCA
GGTTTCTATCCAGCTTGCGGATAAGGGAACTGTTTTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGATCGTTTGGGACAGACCGACAATGATTTTTACCTCTATGCGGAGACCAATATGCAGGCTATTCGAGCAGAGATTGAA
GCCATTCAGCCGGATTTTTTGATTATTGATTCTATTCAGACGATCATGAGTCCGGAGATTTCGGGTGTTCAGGGCTCGGT
CAGTCAGGTGAGAGAGGTCACTGCTGAGCTGCTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATTGTAGGACATG
TCACCAAGGAAGGCACCCTAGCAGGGCCTCGCATGCTGGAGCATATGGTTGATACGGTCCTTTATTTTGAGGGCGAGAGG
CATCATACCTTTCGTATCTTGCGAGCGGTTAAAAATCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGGCTAGTGGAGGTTCTCAATCCCAGTCAGGTGTTCTTAGAGGAACGATTAGATGGGGCAACAGGCTCTGCTGTGG
TTGTCACCATGGAGGGGAGCAGACCGATTTTGGCAGAGGTGCAGGCCTTAGTCACACCGACTGTTTTTGGCAATGCTAGA
CGAACCACTACTGGATTAGACTTTAATCGTGTTAGCCTGATTATGGCTGTCCTAGAAAAGCGCTGCGGCCTGCTGCTACA
AAATCAAGATGCCTACCTCAAATCAGCAGGAGGTGTGAAGCTAGATGAGCCTGCTATTGATTTGGCAGTTGCTGTGGCTA
TTGCTTCTAGCTACAAGGAAAAACCAACCAACCCTCAGGAGGCCTTCTTAGGAGAGATTGGCTTGACGGGCGAGATTCGG
CGGGTCACTCGTATTGAGCAGCGGATCAATGAGGCTGCAAAGCTTGGCTTTACCAAGCTTTACGCTCCTAAAAGCTCATT
GCAGGGCATTGACATACCAAGTGGGATTGAGGTTGTTGGTGTAATGACAGTAGGAGAGGTCTTAAAGGCAGTCTTTGCTT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4U0R5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.327

100

0.843
  radA Streptococcus pneumoniae D39

84.327

100

0.843
  radA Streptococcus pneumoniae R6

84.327

100

0.843
  radA Streptococcus pneumoniae TIGR4

84.327

100

0.843
  radA Streptococcus mitis SK321

84.327

100

0.843
  radA Streptococcus mitis NCTC 12261

84.106

100

0.841
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611

Multiple sequence alignment