Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   DQL39_RS06910 Genome accession   NZ_LS483353
Coordinates   1334556..1335482 (-) Length   308 a.a.
NCBI ID   WP_111718091.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC4001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1329556..1340482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL39_RS09195 - 1330924..1331936 (+) 1013 Protein_1304 IS3 family transposase -
  DQL39_RS09360 - 1332440..1332523 (+) 84 Protein_1305 IS3 family transposase -
  DQL39_RS06900 (NCTC4001_01373) amiF 1332561..1333484 (-) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  DQL39_RS06905 (NCTC4001_01374) amiE 1333477..1334547 (-) 1071 WP_010921893.1 ABC transporter ATP-binding protein Regulator
  DQL39_RS06910 (NCTC4001_01375) amiD 1334556..1335482 (-) 927 WP_111718091.1 oligopeptide ABC transporter permease OppC Regulator
  DQL39_RS06915 (NCTC4001_01376) amiC 1335482..1336984 (-) 1503 WP_011017334.1 ABC transporter permease Regulator
  DQL39_RS06920 (NCTC4001_01377) amiA 1337049..1339019 (-) 1971 WP_038433589.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34931.92 Da        Isoelectric Point: 8.9558

>NTDB_id=1138109 DQL39_RS06910 WP_111718091.1 1334556..1335482(-) (amiD) [Streptococcus pyogenes strain NCTC4001]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPRLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1138109 DQL39_RS06910 WP_111718091.1 1334556..1335482(-) (amiD) [Streptococcus pyogenes strain NCTC4001]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATCGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTGCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGGTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCTAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

72.727

100

0.727
  amiD Streptococcus thermophilus LMD-9

72.727

100

0.727

Multiple sequence alignment