Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQL39_RS01210 Genome accession   NZ_LS483353
Coordinates   226009..226734 (+) Length   241 a.a.
NCBI ID   WP_038433541.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC4001     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 221009..231734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL39_RS01180 (NCTC4001_00232) - 221188..222648 (+) 1461 WP_038433543.1 NCS2 family permease -
  DQL39_RS01185 (NCTC4001_00233) tsaE 222802..223263 (+) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQL39_RS01190 (NCTC4001_00234) - 223238..223762 (+) 525 WP_038433542.1 GNAT family N-acetyltransferase -
  DQL39_RS01195 (NCTC4001_00235) brpA 223771..225054 (+) 1284 WP_002983372.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQL39_RS01200 (NCTC4001_00236) - 225165..225521 (-) 357 WP_002988657.1 hypothetical protein -
  DQL39_RS01205 (NCTC4001_00237) - 225518..225937 (-) 420 WP_002983376.1 HIT family protein -
  DQL39_RS01210 (NCTC4001_00238) pptA 226009..226734 (+) 726 WP_038433541.1 ABC transporter ATP-binding protein Regulator
  DQL39_RS01215 (NCTC4001_00239) - 226737..227771 (+) 1035 WP_002983381.1 ABC transporter permease -
  DQL39_RS01220 (NCTC4001_00240) ccrZ 227835..228626 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQL39_RS01225 (NCTC4001_00241) trmB 228626..229261 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQL39_RS01235 (NCTC4001_00243) rimP 229520..230056 (+) 537 WP_002988815.1 ribosome maturation factor RimP -
  DQL39_RS01240 (NCTC4001_00244) nusA 230231..231388 (+) 1158 WP_002994325.1 transcription termination factor NusA -
  DQL39_RS01245 (NCTC4001_00245) rnpM 231404..231700 (+) 297 WP_002983486.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26677.76 Da        Isoelectric Point: 4.6316

>NTDB_id=1138081 DQL39_RS01210 WP_038433541.1 226009..226734(+) (pptA) [Streptococcus pyogenes strain NCTC4001]
MLNIKNLTGGYHNIPVLNDVSFSVDNGELVGLIGLNGAGKSTTINEIIGFLKPYQGSISIDGLTLAENAVAYRQKIGFIP
ETPSLYEELTLSEHINTVAMAYDINLEVAQKRAQPFLEMFRLTDKLEWFPVNFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLEVEKAKGKSILMSTHVLDSAERMCDRFVILHHGQVRAQGTLADLQEAFGDRSASLNDIYLALTKE
D

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1138081 DQL39_RS01210 WP_038433541.1 226009..226734(+) (pptA) [Streptococcus pyogenes strain NCTC4001]
ATGTTAAACATTAAAAATCTAACAGGAGGATATCACAATATCCCTGTTTTAAACGATGTCTCATTTTCTGTAGACAATGG
AGAGTTAGTCGGTTTGATCGGGCTAAATGGTGCTGGAAAGTCAACAACTATCAACGAAATTATTGGCTTTTTGAAGCCTT
ATCAAGGAAGTATTTCTATTGATGGTTTAACTCTAGCAGAAAATGCAGTTGCTTACCGTCAAAAAATAGGTTTTATCCCA
GAAACTCCTAGTCTCTATGAAGAATTGACCTTATCAGAGCATATCAACACCGTAGCTATGGCTTATGATATCAACTTAGA
AGTGGCACAAAAACGAGCACAACCTTTCTTGGAAATGTTTCGTTTAACTGACAAACTTGAATGGTTTCCTGTCAATTTTT
CTAAAGGGATGAAACAAAAAGTCATGATTATTTGTGCCTTTGTCATTGATCCAAGTCTATTTATTCTTGATGAACCATTC
TTAGGGTTAGACCCTTTAGCTATTTCAGACTTAATCCAAACGCTAGAAGTCGAAAAAGCAAAAGGAAAATCTATTTTGAT
GAGTACACATGTTTTGGACTCTGCTGAAAGAATGTGTGATCGCTTTGTGATTTTGCATCATGGACAAGTTCGTGCCCAAG
GAACTCTTGCTGACTTGCAAGAAGCTTTTGGTGACCGTTCAGCGAGCTTAAATGATATCTATCTTGCATTAACAAAAGAG
GATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.385

99.17

0.718
  pptA Streptococcus thermophilus LMD-9

71.548

99.17

0.71

Multiple sequence alignment