Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   OB04_RS20315 Genome accession   NZ_CP009796
Coordinates   3926659..3927348 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain SG6     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3921659..3932348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS20295 (OB04_03986) yxeA 3922564..3922911 (-) 348 WP_003227084.1 YxeA family protein -
  OB04_RS20300 (OB04_03987) yxdM 3922925..3924793 (-) 1869 WP_038429911.1 ABC transporter permease YxdM -
  OB04_RS20305 (OB04_03988) yxdL 3924768..3925541 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  OB04_RS20310 (OB04_03989) yxdK 3925685..3926662 (-) 978 WP_029726148.1 two-component system sensor histidine kinase YxdK -
  OB04_RS20315 (OB04_03990) braR 3926659..3927348 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  OB04_RS20320 (OB04_03991) iolJ 3927456..3928328 (-) 873 WP_038429913.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  OB04_RS20325 (OB04_03992) iolI 3928349..3929185 (-) 837 WP_015250853.1 2-keto-myo-inositol isomerase -
  OB04_RS20330 (OB04_03993) iolH 3929271..3930140 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  OB04_RS20335 (OB04_03994) iolG 3930160..3931194 (-) 1035 WP_029726147.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=113803 OB04_RS20315 WP_003243527.1 3926659..3927348(-) (braR) [Bacillus subtilis strain SG6]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=113803 OB04_RS20315 WP_003243527.1 3926659..3927348(-) (braR) [Bacillus subtilis strain SG6]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTACTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
TATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTTAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406